RnoEX0065292 @ rn6
Exon Skipping
Gene
ENSRNOG00000009566 | Phf12
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64820653-64823308:-
Coord C1 exon
chr10:64823150-64823308
Coord A exon
chr10:64821842-64822637
Coord C2 exon
chr10:64820653-64820778
Length
796 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCCTTCCATTGCAGTGG
3' ss Score
9.79
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTCCTGATGCTATAAAATCTCAGTACCAGTTTCCACCCCCTCTCATTGCACCTGCGGCCATTCGGGATGGGGAGCTGATCTGCAGTGGGGTCCCTGAGGAATCGCAAACGCACCTTTTGAACTCTGAGCACTTAGCCACCCAGACAGAGCAGCAAGAG
Seq A exon
TGGCTCTGTAGTGTTGTTGCCCTCCAGTGCAGCATATTGAAACATTTATCTGCTAAGCAGATGCCTTCGCATTGGGACTCTGAACAGACAGAGAAGGCTGATATTAAGCCTGTTATTGTGACTGACAGCTCAATCACCACCTCCCTGCAAACAGCTGACAAGGCACCTCTACCTTCCCACTACCCTTTGTCCTGCCCCTCAGCAATGAGCACCCAGAATTCCCTGGGCTGCTCTCCACCCCACCAACCCCCAACCCTAGAGGATATCAGCTGCAGTTCTTGTGTGGAAAAGTCCAAGAAAGCCCCTTGTGGGACTGCCAATGGGCCAGTGAACACAGAGGTAAAAGCCAATGGCCCACACCTCTACAGCAGCCCCACTGATTCCTCGGATCCCCGGCGACTCCCTGGCGCCAACACCCCTTTACCGGGCCTCACTCACCGGCAAGGCTGGCCCCGGCCCCTCACACCACCATCGGCTGGGGGTCTTCAGAACCACGCCGTCGGCATCATTGTGAAGACAGAAAATGCCACTGGCCCCAGCTCTTGTCCCCAGAGGAGTTTGGTACCTGTCCCAAGCCTGCCCCCTTCCATTCCCAGCTCTTGTGCCAGCATCGAGAACACCAGCACTTTGCATAGAAAGACTGTCCAATCACAGATAGGACCTTCGTTGACAGAATCGAGGCCTCTGGGCTCACCCCCAAATGCCACCCGGGTGCTCACTCCCCCCCAAGCTGCAGGAGACAGTATCTTGGCCACAGGCGCCAACCAACGATTCTGCTCACCAGCGCCATCATCAG
Seq C2 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTTATGGATGTCAGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566-'16-15,'16-11,17-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.151 A=0.816 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGCTATAAAATCTCAGTACCA
R:
TCCGCTGACATCCATAAATGCT
Band lengths:
281-1077
Functional annotations
There are 2 annotated functions for this event
PMID: 24782567
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: detection by mass spectrometry. ELM ID: ELMI002883; ELM sequence: EKADIKPV; Overlap: FULL
PMID: 25218447
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: Identification by mass spectrometry, detection by mass spectrometry, his tag, pull down. ELM ID: ELMI002883; ELM sequence: EKADIKPV; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]