BtaEX0026773 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015976 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr19:20840687-20843580:-
Coord C1 exon
chr19:20843422-20843580
Coord A exon
chr19:20842002-20842797
Coord C2 exon
chr19:20840687-20840812
Length
796 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCCTTCCGTTGCAGTGG
3' ss Score
9.74
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTCCCGATGCCATCAAATCTCAGTACCAGTTCCCACCCCCTCTCATTGCACCCGCGGCCATTCGGGACGGGGAGCTGATCTGCAATGGGATCCCTGAGGAATCACAGACGCACCTTGTGAACTCTGAGCACTTAGCCACCCAGGCAGAGCAGCAAGAG
Seq A exon
TGGCTCTGTAGTGTTGTTGCGCTCCAGTGCAGCATATTGAAACATTTATCTGCTAAGCAGATGCCTTCGCATTGGGACTCTGAACAGACAGAGAAGGCTGATATTAAGCCTGTTATTGTGACTGACAGCTCAATCACCACCTCCCTGCAAACAGCTGACAAGGCACCTCCACCTTCCCACTACCCCTTGTCCTGCCCCTCAGGGCTTAGCACCCAGAATTCCCTGAGCTGCTCTCCACCCCACCAACCCCCCACCCTAGAGGACATCAGCTGCAGCTCTTGTGCGGAAAAATCCAAGAAAGCCCCCTGTGGGACTGCCAACGGGCCGGTGAACACAGAGGTGAAAGCCAATGGCCCACACCTCTACAGCAGCCCCACTGATTCCACGGACCCCCGGCGACTTCCAGGCGCCAACACCCCCCTACCCGGCCTCTCACACCGGCAAGGCTGGCCCCGGCCCCTCACGCCACCAGCGGCTGGGGGGCTTCCGAACCACACCGTCGGCATCATTGTGAAGACAGAGAATGCCACTGGCCCCAGCTCTTGCCCCCAGAGGAGTGTGGGTCTTGTCCCAAGCCTACCCCCTTCCGTTCCCAGCTCTTGTGCCAGCATCGAGAACACCAGCACTTTGCAAAGAAAGACTGTCCAATCCCAGATAGGACCTCCGTTGACAGATTCAAGGCCACTGGGCTCACCCCCAAATGCCACCCGGGTGCTCACTCCCCCCCAAGCAGCAGGTGATGGTATCTTGGCCACAGGAGCCAATCAACGATTCTGCTCACCAGCGCCGTCATCAG
Seq C2 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTCATGGATGTCAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015976-'23-18,'23-13,25-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.842 C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATGCCATCAAATCTCAGT
R:
CCATTGACATCCATGAATGCTCG
Band lengths:
280-1076
Functional annotations
There are 2 annotated functions for this event
PMID: 24782567
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: detection by mass spectrometry. ELM ID: ELMI002883; ELM sequence: EKADIKPV; Overlap: FULL
PMID: 25218447
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: Identification by mass spectrometry, detection by mass spectrometry, his tag, pull down. ELM ID: ELMI002883; ELM sequence: EKADIKPV; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development