MmuEX6087810 @ mm10
Exon Skipping
Gene
ENSMUSG00000037791 | Phf12
Description
PHD finger protein 12 [Source:MGI Symbol;Acc:MGI:1924057]
Coordinates
chr11:78022358-78025086:+
Coord C1 exon
chr11:78022358-78022516
Coord A exon
chr11:78023027-78023819
Coord C2 exon
chr11:78024961-78025086
Length
793 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCCTTCCATTGCAGTGG
3' ss Score
9.79
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTCCTGATGCTATAAAATCTCAGTACCAGTTTCCACCCCCGCTTATTGCACCCGCGGCCATTCGGGACGGGGAGCTGATCTGCAGTGGGGTCCCTGAGGAATCACAAACGCACCTTTTGAACTCTGAGCACTTAGCCACTCAGGCAGAGCAGCAGGAG
Seq A exon
TGGCTCTGTAGTGTTGTTGCGCTCCAGTGCAGCATATTGAAACATTTATCTGCTAAGCAGATGCCTTCGCCTTGGGACTCTGAACAGACAGAGAAGGCTGATATTAAGCCTGTTATTGTGACTGACAGCTCAATCACCACCTCCCTGCAAACCGCTGACAAGGCACCTCTTCCTTCCCACTACCCTTTGTCCTGCCCCTCAGCAGTGAGCACCCAAAATTCCCTGGGCTGCTCTCCACCCCACCAACCCCCAACCCTAGAAGACATCAGCTGCAGTTCTTGTGTGGAAAAGTCCAAGAAAGCCCCTTGTGGGACTGCCAATGGGCCGGTGAACACAGAGATAAAAGCCAATGGCCCACACCTCTACAGCAGCCCCACTGATTCCACGGATCCCCGGCGACTTCCTGGCGCCAACACCCCTTTACCAGGCCTCACACACCGGCAAGGCTGGCCCCGGCCCCTCACGCCACCATCGGCTGGGGGACTTCAGAACCACGTCGGCATCATTGTGAAGACAGAAAATGCCACTGGCCCCAGCTCTTGTCCCCAGAGGAGTTTGGTACCCGTCCCAAGCCTGCCCCCTTCCATTCCCAGCTCTTGTGCCAGCATCGAGAACACCAGCACTTTGCATAGAAAGACTGTCCAGTCACAGATAGGACCTTCGTCGACAGAATCGAGGCCTCTGGGCTCACCCCCAAATGCCACCCGGGTGCTCACTCCCCCCCAGGCTGCAGGAGACAGTATCTTGGCCACAGGTGCCAACCAACGATTCTGCTCACCAGCGCCATCATCAG
Seq C2 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTTATGGATGTCAACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037791-'22-41,'22-26,24-41
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.808 C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGCTATAAAATCTCAGTACCA
R:
CCGTTGACATCCATAAATGCTCG
Band lengths:
280-1073
Functional annotations
There are 2 annotated functions for this event
PMID: 24782567
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: detection by mass spectrometry. ELM ID: ELMI002883; ELM sequence: EKADIKPV; Overlap: FULL
PMID: 25218447
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: Identification by mass spectrometry, detection by mass spectrometry, his tag, pull down. ELM ID: ELMI002883; ELM sequence: EKADIKPV; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types