MmuEX0034711 @ mm10
Exon Skipping
Gene
ENSMUSG00000037791 | Phf12
Description
PHD finger protein 12 [Source:MGI Symbol;Acc:MGI:1924057]
Coordinates
chr11:78023027-78025086:+
Coord C1 exon
chr11:78023027-78023819
Coord A exon
chr11:78024813-78024929
Coord C2 exon
chr11:78024961-78025086
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCTCACCACACGTTTTTAGCTC
3' ss Score
5.14
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
CAAGAAAGCCCCTTGTGGGACTGCCAATGGGCCGGTGAACACAGAGATAAAAGCCAATGGCCCACACCTCTACAGCAGCCCCACTGATTCCACGGATCCCCGGCGACTTCCTGGCGCCAACACCCCTTTACCAGGCCTCACACACCGGCAAGGCTGGCCCCGGCCCCTCACGCCACCATCGGCTGGGGGACTTCAGAACCACGTCGGCATCATTGTGAAGACAGAAAATGCCACTGGCCCCAGCTCTTGTCCCCAGAGGAGTTTGGTACCCGTCCCAAGCCTGCCCCCTTCCATTCCCAGCTCTTGTGCCAGCATCGAGAACACCAGCACTTTGCATAGAAAGACTGTCCAGTCACAGATAGGACCTTCGTCGACAGAATCGAGGCCTCTGGGCTCACCCCCAAATGCCACCCGGGTGCTCACTCCCCCCCAGGCTGCAGGAGACAGTATCTTGGCCACAGGTGCCAACCAACGATTCTGCTCACCAGCGCCATCATCAG
Seq A exon
CTCTAGGAGTTCCAGAGCCTGTGGGTTGAGAATCAAGAAGGGAACATCACCTTGGGTCCGAAATCCAGAACTGTCTCAACAATGGGGGATTGGACCGGTGGGTTTCCCTCAGGCGAC
Seq C2 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTTATGGATGTCAACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037791_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=1.000 C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTGCCAGCATCGAGAAC
R:
GGTACGGTTAAAGCGCTTCCT
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types