BtaEX0027093 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004901 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr15:35924025-35928173:+
Coord C1 exon
chr15:35924025-35924161
Coord A exon
chr15:35927017-35927186
Coord C2 exon
chr15:35928017-35928173
Length
170 bp
Sequences
Splice sites
3' ss Seq
ATAATTTATCTTTATTATAGGCT
3' ss Score
7.51
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCATGGTGGAGCTAGTTCCTGCTTCAGATACCCTCAGGAAAATCCAAGTGGAATATGGTGTGACTGGATCCTTCAAAGATAAACCGCTTGCTGAGTGGCTGAGGAAATACAATCCTTCTGAAGAGGAATATGAAAAG
Seq A exon
GCTTCTGAGAATTTTATCTATTCTTGTGCTGGATGCTGTGTAGCCACCTATGTTTTAGGCATCTGTGATCGACACAATGACAATATAATGCTTCGAAGCACAGGACACATGTTTCATATTGACTTTGGAAAGTTTTTGGGCCACGCCCAGATGTTTGGTAGCTTCAAAAG
Seq C2 exon
GGATCGGGCTCCTTTTGTGCTGACCTCTGACATGGCATATGTCATTAATGGGGGTGAAAAGCCCACAATTCGTTTCCAATTGTTTGTGGACCTCTGCTGTCAAGCCTACAACTTGATAAGAAAGCAAACAAACCTCTTTCTTAACCTCCTTTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004901_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGTGGAGCTAGTTCCTG
R:
GCTTGACAGCAGAGGTCCAC
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development