GgaEX1043789 @ galGal3
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12852639-12854492:-
Coord C1 exon
chr5:12854356-12854492
Coord A exon
chr5:12853457-12853626
Coord C2 exon
chr5:12852639-12852795
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCCTTCCCTTCCCAGGCT
3' ss Score
11.42
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTATGGTAGAACTTGTTCCTGCATCGGAAACACTTAGGAAAATTCAAGTGGAATATGGAGTGACAGGTTCTTTTAAAGACAAGCCTCTGGCAGAATGGTTGCGAAAGTATAATCCTACAGAGGAGGAATACGAAAAG
Seq A exon
GCTTCAGAAAACTTCATTTATTCTTGTGCAGGATGCTGTGTCGCTACTTATGTCCTGGGAATTTGTGACCGCCACAACGATAACATAATGCTTCGAAACACAGGGCATATGTTTCACATTGACTTTGGAAAGTTTCTGGGTCACGCGCAAATGTTTGGTAGCTTTAAAAG
Seq C2 exon
GGATCGGGCTCCATTTGTGCTAACATCTGACATGGCTTATGTCATTAATGGTGGTGAAAAACCCACTATTCGCTTTCAGTTGTTTGTGGATCTCTGTTGTCAAGCTTACAATTTGATAAGGAAACATGCAAACCTCTTCCTTAACCTACTTTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-'28-30,'28-28,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
A:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(24.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTAGAACTTGTTCCTGCATCG
R:
AAGCTTGACAACAGAGATCCACA
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]