BtaEX0027795 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19361111-19389693:+
Coord C1 exon
chr3:19361111-19361135
Coord A exon
chr3:19379948-19380072
Coord C2 exon
chr3:19389518-19389693
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTAATCTTTTTTTCTTGTAGCAT
3' ss Score
10.14
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTACCGGCGGCGACGACCACGGGAG
Seq A exon
CATGGCGGACACCGACCTGTTTATGGAATGTGAGGAGGAGGAGTTGGAGCCATGGCAGAAAATCAGTGATGTCATTGAGGATTCTGTAGTTGAGGACTATAATTCAGTGGATAAAACTACTACAG
Seq C2 exon
CTGGCAATTCTTTGGTGCAACAAGGTGGACAGCCACTCATCCTAACCCAGAATCCAGCCCCAGGTCTCGGTACAATGGTTACTCAACCAGTATTGAGGCCTGTGCAGGTCATGCAGAATGCCAACCATGTGACTAGTTCGCCGGTAGCCTCACAGCCAATATTTATCACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289-'0-3,'0-0,5-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.538 C2=0.521
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development