RnoEX0067847 @ rn6
Exon Skipping
Gene
ENSRNOG00000053599 | Pogz
Description
pogo transposable element derived with ZNF domain [Source:RGD Symbol;Acc:1309980]
Coordinates
chr2:195996521-196015976:+
Coord C1 exon
chr2:195996521-195996759
Coord A exon
chr2:196013802-196013926
Coord C2 exon
chr2:196015818-196015976
Length
125 bp
Sequences
Splice sites
3' ss Seq
TAACTTTATTTTTCTTGTAGTAT
3' ss Score
6.67
5' ss Seq
CCGGTAACT
5' ss Score
6.39
Exon sequences
Seq C1 exon
CCCTCGGGGCCCCCCCGCCCCCCTCGGGAAAAAAATCCACCCCAATCACTCGAACCCGAGGGAGCCTTCCTTTCACCCTCGGGGAGAGGAGCTTTCAACGGTTCCCTCTCCTCTGTCTCCCCCCCAACCCCCGTCCCCTCCCCTGCTCCCACCCCCTACTCCCGGCGCCGGGTGCAAGGTCCCTTTAAGGCGACGGCACCTTCCTCGGGTCAGACTACCGGCGGCGACGACCACGGGAG
Seq A exon
TATGGCGGACACCGACCTTTTTATGGAATGTGAGGAGGAAGAACTGGAGCCATGGCAGAAAATCAGTGATGTCATTGAGGACTCTGTAGTTGAAGATTACAATTCAGTGGATAAAACTACTCCCG
Seq C2 exon
TTTCTGTGAGCCAGCAGCCAGTCTCAGCTCCAGTGCCCATTGCTGCCCATGCTTCTGTGGCTGGGCACCTCTCTACATCCACTACTGTTAGTAGCAGTGGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTTACACTAATTGCCAACAACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053599-'1-5,'1-3,5-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.698 C2=0.759
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCTCTCCTCTGTCTCCC
R:
TGCCCCACTGCTACTAACAGT
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]