MmuEX0036132 @ mm10
Exon Skipping
Gene
ENSMUSG00000038902 | Pogz
Description
pogo transposable element with ZNF domain [Source:MGI Symbol;Acc:MGI:2442117]
Coordinates
chr3:94852845-94856201:+
Coord C1 exon
chr3:94852845-94852945
Coord A exon
chr3:94853950-94854074
Coord C2 exon
chr3:94856043-94856201
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTAATTTTATTTTTTTGTAGCAT
3' ss Score
7.61
5' ss Seq
CCGGTAACT
5' ss Score
6.39
Exon sequences
Seq C1 exon
TGAGAGAGAAAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGAGAGAGAGGGGGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
Seq A exon
CATGGCGGACACCGACCTGTTTATGGAATGTGAGGAGGAGGAACTGGAGCCATGGCAGAAAATCAGTGATGTCATTGAGGACTCTGTAGTTGAAGATTACAATTCTGTGGATAAAACTACTTCCG
Seq C2 exon
TTTCTGTGAGCCAGCAGCCAGTCTCAGCTCCAGTGCCCATTGCTGCCCATGCTTCTGTTGCTGGGCACCTCTCTACATCCACTACTGTTAGTAACAGTGGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTCACACTAATTGCCAACAACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038902-'3-2,'3-1,5-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.575 C2=0.756
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGTGTGTGTGTGTGTGT
R:
TGTTGTTGGCAATTAGTGTGACA
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types