RnoEX0067858 @ rn6
Exon Skipping
Gene
ENSRNOG00000053599 | Pogz
Description
pogo transposable element derived with ZNF domain [Source:RGD Symbol;Acc:1309980]
Coordinates
chr2:196013802-196020143:+
Coord C1 exon
chr2:196013802-196013926
Coord A exon
chr2:196015818-196015976
Coord C2 exon
chr2:196019968-196020143
Length
159 bp
Sequences
Splice sites
3' ss Seq
GTGCCTTCCCTTCCCCACAGTTT
3' ss Score
11.6
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TATGGCGGACACCGACCTTTTTATGGAATGTGAGGAGGAAGAACTGGAGCCATGGCAGAAAATCAGTGATGTCATTGAGGACTCTGTAGTTGAAGATTACAATTCAGTGGATAAAACTACTCCCG
Seq A exon
TTTCTGTGAGCCAGCAGCCAGTCTCAGCTCCAGTGCCCATTGCTGCCCATGCTTCTGTGGCTGGGCACCTCTCTACATCCACTACTGTTAGTAGCAGTGGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTTACACTAATTGCCAACAACAATG
Seq C2 exon
CTGGTAATACTTTGGTCCAGCAAGGTGGACAACCACTCATCTTGACCCAAAATCCAACACCGGGTCTGGGAACAATGGTTACTCAACCAGTATTGAGACCTGTCCAGGTCATGCAGAATGCCAATCATGTGACTAGCTCCCCTGTGGCCTCACAACCTATCTTCATCACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053599_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=0.759 C2=0.616
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGGAAGAACTGGAGCC
R:
CCACAGGGGAGCTAGTCACAT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]