BtaEX0027798 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19379948-19389693:+
Coord C1 exon
chr3:19379948-19380072
Coord A exon
chr3:19381047-19381205
Coord C2 exon
chr3:19389518-19389693
Length
159 bp
Sequences
Splice sites
3' ss Seq
GTGCCTCCCCTTCCCCGCAGTTT
3' ss Score
11.38
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CATGGCGGACACCGACCTGTTTATGGAATGTGAGGAGGAGGAGTTGGAGCCATGGCAGAAAATCAGTGATGTCATTGAGGATTCTGTAGTTGAGGACTATAATTCAGTGGATAAAACTACTACAG
Seq A exon
TTTCTGTGAGCCAGCAGCCTGTCTCGGCTCCAGTGCCCATCGCTGCCCATGCTTCTGTCGCTGGGCATCTCTCTACATCCACCACCGTTAGTAGCAGCGGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTCACACTCATTGCCAACAACAATG
Seq C2 exon
CTGGCAATTCTTTGGTGCAACAAGGTGGACAGCCACTCATCCTAACCCAGAATCCAGCCCCAGGTCTCGGTACAATGGTTACTCAACCAGTATTGAGGCCTGTGCAGGTCATGCAGAATGCCAACCATGTGACTAGTTCGCCGGTAGCCTCACAGCCAATATTTATCACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.611 C2=0.521
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000033883fB5349
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGAGCCATGGCAGAAA
R:
TATTGGCTGTGAGGCTACCGG
Band lengths:
246-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development