DreEX0056768 @ danRer10
Exon Skipping
Gene
ENSDARG00000076542 | pogzb
Description
pogo transposable element with ZNF domain b [Source:ZFIN;Acc:ZDB-GENE-100609-3]
Coordinates
chr16:38169837-38171514:+
Coord C1 exon
chr16:38169837-38169946
Coord A exon
chr16:38170113-38170229
Coord C2 exon
chr16:38171342-38171514
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTCGTCCTCCAATGTTAAGTCA
3' ss Score
3.12
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AAACATGGATTCGGATTTGTTTATGGAGTGTGAGGAGGAGGAGCTGGAGCCATGGCAACAGCAGTCTATGGATGAACCAGCCGGAAATGCTGAAAGCAGTACTCCCTCCG
Seq A exon
TCACTTCCACTCCAGCCCCGGTGGTTGATGTTCCAGCTCCGCCTAAGACCATGGTGATCCCAAGCCTAACGTCTGTAGTAAATGCGGCGAACACGGTTCCGCTGATCACAAATACAA
Seq C2 exon
TAACTCAACGTGCGGTTGTGCCGACTGAGATCCCTAAAGCAGTGCAAGGGCAGCCGGTCATCTTGGCACCAGGAGGAGGTGGACTGGGCACTGTGGCTCTGTCACAGGTTCTCCTGCCTGGAACATCTATTGCCAATGTTACCAACAGTCAGCCGATCTACTTTACCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076542-'4-9,'4-2,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.994 A=0.369 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTGAGGAGGAGGAGCTG
R:
AGTAGATCGGCTGACTGTTGGT
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]