BtaEX0028237 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12283927-12308468:+
Coord C1 exon
chr4:12283927-12284062
Coord A exon
chr4:12289435-12289500
Coord C2 exon
chr4:12308313-12308468
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTCAACCATTTTAGAAC
3' ss Score
7.78
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATTTGTTATTGGGCGAGAAAAACCTGGACAAGTGAGTGAGGTTGCCCAGTTGATAAGCCAGACGCTGGAACAAGAAAGGCGCCAGAGAGAGCTGCTTGAACAGCACTATGCCCAGTACGATGCTGACGACGATGAG
Seq A exon
AACACTGTGGCTGAATTGCAAGGAGTGTCTGGCAACTGCAATAACAATAACAACTATTTCCTAAAG
Seq C2 exon
ACAGGAGAATATGCCACAGATGAAGAGGAGGACGACGTAGGGCCTGTTCTTCCTGGAGGCGACATGGCCATCGAAGTCTTCGAGCTGCCTGAGAACGAGGACGTGTTTTCCCCCTCAGACCTGGATACAAGCAAGCTCAGTCACAAGTTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.545 C2=0.548
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGCTGGAACAAGAAAGGC
R:
GTTCTCAGGCAGCTCGAAGAC
Band lengths:
173-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development