RnoEX0068933 @ rn6
Exon Skipping
Gene
ENSRNOG00000008869 | Ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:RGD Symbol;Acc:632280]
Coordinates
chr4:30159755-30182537:+
Coord C1 exon
chr4:30159755-30159890
Coord A exon
chr4:30165249-30165314
Coord C2 exon
chr4:30182382-30182537
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTGTCAACATTTTAGACC
3' ss Score
7.13
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GTTTGTTATTGGACGAGAAAAACCAGGACAAGTGAGTGAGGTTGCCCAGTTGATCAGCCAGACCCTGGAACAAGAGAGGAGACAGAGGGAGCTGCTCGAACGCCACTACGCCCAGTATGATGCTGACGACGATGAG
Seq A exon
ACCACTGTGGCTGAATTGCAAGGAGTGTCTGGCAACTGCAATAACAATAACAACCGTTTCCTTAAG
Seq C2 exon
ACCGGAGAATATGCCACTGATGAAGAAGAAGATGAGGTTGGACCCATTCTTCCTGGTGGTGACATGGCCATTGAAGTCTTCGAGCTCCCTGAGAATGAGGACATGTTTTCCCCATCTGACTTGGATACAAGCAAGCTCAGTCACAAGTTCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008869_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=0.818 C2=0.599
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.7=8.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000011756fB11218
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGTGAGTGAGGTTGCCC
R:
TCACCACCAGGAAGAATGGGT
Band lengths:
172-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]