BtaEX0028681 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001821 | PRRC2C
Description
Bos taurus proline-rich coiled-coil 2C (PRRC2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001206655]
Coordinates
chr16:39933640-39937167:+
Coord C1 exon
chr16:39933640-39933766
Coord A exon
chr16:39936401-39936453
Coord C2 exon
chr16:39936910-39937167
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTGATGCTCTTCCCCTGCAGAAG
3' ss Score
10.66
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
GGCTACTTCCACAAGTCCGAACAGCCAGTCCAGCAAAATGAACAGCATTGTCTATCAGAAGCAGTTCCAGTCAGCCCCTGCCACTGTGAGAATGGCACAACCATTTCCTACACAGTTTGCACCCCAG
Seq A exon
AAGAGAGCTGTGGGAAGAGGACTCAGCCACAAGACATTTGGTCCTAGGTGTTG
Seq C2 exon
GCAAAGCAGAGAGCAGAGGTTCTTCAGTCCACGCAACGGTTCTTCTCTGAACAGCAACAGAACAAACAGATAGGAGGCAAAGCCCAGAAAGTGGACAGTGACTCAAGTAAACCTCCTGAAACCCTGACCGACCCTCCTGGTGTCTGTCAGGAAAAAGTAGAAGAAAAGCCACCCCCTGCACCCACCATAGCCACCAAACCTATTAGAACTGGACCAATCAAACCTCAGGCGATCAAAACCGAAGAAACAAAATCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001821_MULTIEX2-4/4=2-C2
Average complexity
C2
Mappability confidence:
75%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCACAAGTCCGAACAGC
R:
AACCTCTGCTCTCTGCTTTGC
Band lengths:
144-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development