BtaEX0028679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001821 | PRRC2C
Description
Bos taurus proline-rich coiled-coil 2C (PRRC2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001206655]
Coordinates
chr16:39933145-39937167:+
Coord C1 exon
chr16:39933145-39933248
Coord A exon
chr16:39933640-39933766
Coord C2 exon
chr16:39936910-39937167
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGTGATGGCTTCTCTCCAAGGGC
3' ss Score
3.4
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ATGTCTGAAATGGAACTAAAAGCCTTTGGAAGTGGCATTGATATAAAACCAGGCACTCCTCCAATCAGTGGCAGAAGCACCACACCAACATCTAGTCCTTTCCG
Seq A exon
GGCTACTTCCACAAGTCCGAACAGCCAGTCCAGCAAAATGAACAGCATTGTCTATCAGAAGCAGTTCCAGTCAGCCCCTGCCACTGTGAGAATGGCACAACCATTTCCTACACAGTTTGCACCCCAG
Seq C2 exon
GCAAAGCAGAGAGCAGAGGTTCTTCAGTCCACGCAACGGTTCTTCTCTGAACAGCAACAGAACAAACAGATAGGAGGCAAAGCCCAGAAAGTGGACAGTGACTCAAGTAAACCTCCTGAAACCCTGACCGACCCTCCTGGTGTCTGTCAGGAAAAAGTAGAAGAAAAGCCACCCCCTGCACCCACCATAGCCACCAAACCTATTAGAACTGGACCAATCAAACCTCAGGCGATCAAAACCGAAGAAACAAAATCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001821_MULTIEX2-2/4=1-C2
Average complexity
C2
Mappability confidence:
83%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=0.884 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCAGTGGCAGAAGCACCA
R:
GTTTGGTGGCTATGGTGGGTG
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development