BtaINT0118654 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001821 | PRRC2C
Description
Bos taurus proline-rich coiled-coil 2C (PRRC2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001206655]
Coordinates
chr16:39934608-39937167:+
Coord C1 exon
chr16:39934608-39934844
Coord A exon
chr16:39934845-39936909
Coord C2 exon
chr16:39936910-39937167
Length
2065 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
GTTGTTTCTCATTTTTTAAGGCA
3' ss Score
7.47
Exon sequences
Seq C1 exon
ATTCTCTCTCAACCTAACCTGGTCCCTCCATTGGTAAGAGCCCCACATACTAACACCTTCCCAGCGCCTGTTCAGAGGCCACCAATGGCACTGGCCAGTCAGATGCCTCCTCCGCTGACCACAGGCCTCATGAGCCATGCTCGTTTGCCACATGTAGCCAGGGGTCCTTGTGGATCACTATCTGGAGTCAGAGGTAATCAGGCCCAGGCTGCGTTGAAGGCTGAACAAGACATGAAG
Seq A exon
GTTAGTACAGTGTTAACAGCCAACAGAGCACGAATCTGTCTCTGAACCATGTCTTACGATGCCTCTGGACCCGTAACTGCCTATCCAGGCATTCATTGTCTTAGCAGACTTGACCACACTAACTACTTTTGTTCATCACCACCTCCTTTTTTTAATTTAATTTTTTTTCTTCCTACTCCCCCCACCCCACACACACACACACACACACACACACTTTTCTTTTTCTTTTTTATGTTTTTATTTTTTGTTTGTTTCTTATTTTTGCAATTATAGTCAGCAAACAAGTTAACGTTTTAAACTCTGTGGCCAAATGAATTGTTTATAGAATAAATGTTTGAGATCTGAGTTTAGCTGGTATATTTTTTGGGAAGAGCAAATAAGTAATATGAATTATTACAGGCTTCCCCATTTTCTTTCTTTTTGGTTTTTCTTCCCTTCCCACCCCCACCCCCATCCCAAGATATAAATCATTGTTATGTGAAACCTCTGGAATGGGTAAGGCATGTTATCTTGATTTTTCTTCCTTCATGAGTCATCCAAGCATCCAAGTATAGTTTTCTTCTCAAACTGGTTTCATATCTTTTTTTTTTTTTTTGCCTGCCATTTGAGGCATCCGTATTCCACAACTGATTGTGTAGTTGTAGATGAAGAACTCAAAAAGCACTTTGGGATCCTTCATGATAAAAGGCACTGATAAACATGAGGTTTGCTAAACGCAGAAGGGTGCCTTGAGGAGTCTGTGTGGGGACAGTTCTTGCAGCATAAACTTAACCTGTCTGCCAGTACAGATAGCTGAATAATTTATTTCTGTTTCTATATTTACTTAGACTTGACTTTTAAAGTCTTAGTACTTCTGCCAATTTTGTCAGTATATATATCAGGCAAGATGAGAACAAAAAAAAGCTTACCGCTTTCAAATGGGAAATGTCCATAGTCACACTTTATTCTGAATTAGAAATATGTTTAGGACAATCCTGTTAGAAAATTCAGTTGATTCAGTAAAGTTTCTTTCTGGGTTGATGTCCCTTGTTTGTGATCCTGAATAATCAAATTTAAAGATTGCCCTGAAGTGAAACACTTGTTGAATGTTATCTGCTTTTATTAAGGCTGCGTACCTAGGATTTCCATCCATTTGTAACTATTAAAAATACTATATGTGTAGAAATCTTTGGAAACCATTTGGCCTTGGTTTCCAGTTCTATTGCCTCCTTGCCACTTGATTTTCCTACATCCGCATGTTGGAAATTACATTAGAGCTTAATAATGGGGTGGAAAAGGATACAGATGTCATGAAATTGCTTCAGATCTTTGAATAGTACAGGTTACCTGTAGAACATGAAGAGCTTTTGTTATATGCAAGAGGTGTAGAAACTTTAGTCTTAATTGTGTATGTTATGGTGGTATAATTTACAGATTGACGTAAGTATATTCTTTGGGGGCACAGCGTCAATAAAACTAGGAAATTATTTTACCAGCTCAGAATGTGGTAGGAGCTATCAGAACTTAGTGATCAAGTGAAGTTGTAGTTACTAATTTCTGATGCTCTTCCCCTGCAGAAGAGAGCTGTGGGAAGAGGACTCAGCCACAAGACATTTGGTCCTAGGTGTTGGTAATGCCACAATATAAGTGCTTCCTTTTCATTTTATTGTAGACCACATATTGATAAATAGAAGTTTTAAGTATTACATATATATGTTTTCAAATTTGCAAGCAGGCTCCCTAAATAAAATTTGATATCAATAAGTTTTTTACAGAAAAGATACAAACCAACAGCAATTTATATTTTATTGTTTTTTTACAAGGGCAAACTTTGGAAAGATGGTGGGAGGTGGTCCTATTCTTTTCAGTTTTTGTTTTGTTTTGTTTTTGTTTTGAATCACATGGAATGTTCTCAAAAATAGGAAGAAATCTATCCATTAAAAGCTGACAGATCAATGAGGTACTTTGGGGCCAAACCAACGTGGGGAAAACTGATTTGTGATTGGTAAAAAGATTTGAACTGAGATTGATTGACAGGCTTTGGTTATACTGCAGCATTTTCAGTTGTTGTTTCTCATTTTTTAAG
Seq C2 exon
GCAAAGCAGAGAGCAGAGGTTCTTCAGTCCACGCAACGGTTCTTCTCTGAACAGCAACAGAACAAACAGATAGGAGGCAAAGCCCAGAAAGTGGACAGTGACTCAAGTAAACCTCCTGAAACCCTGACCGACCCTCCTGGTGTCTGTCAGGAAAAAGTAGAAGAAAAGCCACCCCCTGCACCCACCATAGCCACCAAACCTATTAGAACTGGACCAATCAAACCTCAGGCGATCAAAACCGAAGAAACAAAATCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001821:ENSBTAT00000002380:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development