MmuINT0024003 @ mm10
Intron Retention
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:162670725-162674151:-
Coord C1 exon
chr1:162674099-162674151
Coord A exon
chr1:162673657-162674098
Coord C2 exon
chr1:162670725-162673656
Length
442 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATG
5' ss Score
4.83
3' ss Seq
TTGTTTTCTTATTTTTAAAGGCA
3' ss Score
8.1
Exon sequences
Seq C1 exon
AAGAGAGCTGTGGGAAGAGGACTCAGCCACAAGACATTTGGTCCTAGGTGTTG
Seq A exon
GTAATGCCACAATATAAGTGCTTCCTTTTCATTCTATTGTAGACCACATGTTGATAACTAGAAGTTTTAAGTGTTACGTTACATGTATGCTTTCAGACTGTGCAAGCAGCCTCCCCAATAAAGTCTGGTATTAGTGAGCTGTTCCCAAAAGAGAGAGAATCGGCAGCAATGTGTATTTTATTGTTTATAAGAGGGCAGACGCTAGAAAGATGGTGGGGGGTGGCCTTGTTTCAGGTGTTTTGTTTTTTTTAAATCACATAGAATATTTTCAGAGCTAGGAGAAACCTATGCATTAAAAACTGAAAGATCGATGGGGCACAAACTTAGGGAAAACTGATTTTTGTGATTGGTACAAAAATTTGAACTGAGATTGATTTGACAGGCTTTGGTAATGTTAGGTAATGTTGCAGTGCTTTCAGTTTTTGTTTTCTTATTTTTAAAG
Seq C2 exon
GCAAAGCAGAGAGCAGAGGTTCTTCAGTCCACGCAGCGGTTCTTCTCTGAACAGCAACAGAACAAACAGATAGGAGGCAAAACCCAGAGAGTGGACAGTGATACAAGTAACCCTGAAACGCTGAGTGACCCTCCTGGCACCTGTCCGGAAAAAGTAGAAGAAAAGCCACCCCCTGCACCCACCATAACCACCAAACCTGTTAGAACTGGACCAATCAAACCTCAGGCCATCAAAACCGAAGAAACAAAATCGTAAAGGCTGTGGTTTATTGGGGATGGGTGGGTAGGGAAAGTGAAGTCAAATAATGCCAGCCAGCAGCCACAGGGGTAAAGTGGTCTGTGACATCATCCTGTGAGACACAAGGGGCATAGAGCATTTACAGTGACAGAGCTGCTGCACAGTGAGGCTCCACAGGCTCGCACCTCCGGTGTAACATTTGCATCTTCAGTTGGTTTGTATACAAGTACGTAAACAGTCTGTAAGTGCATACAGTTTAGTCCTAAGGAGCATGAAACACCAGAAGTAGGAGGAGGAGAGCGATAGATACCACAGAGTAGCTCAGCTGGACACTGGGTGGTCCCATGAATCCATCAGCTGTGGCTCTTCTGCTCCCTTGTGTTCTTTGGATGTGTCTATGGCTCTTCTAGGCTTGAAAGTAAAATGATGCTAACTGGTGCTGGATAGAGGAGCCTTATCTTTTATTACGGCAGCTTGCTATTTTTGTAACATGGTGATTTGGTTGAACACAATAAAGTACAGTAGTAACTGATCTCCCCTCTTCCTGGATGAGTGAGCAGATGATTGAATATTGATGTCAGCATCCTTGAACACACTCAGATGAGCAACATAGAGCTTCTGCTTCTATTTAAAATGATGCTGGGTTTGATTGTGGTCCGAAGCTTTGAAGCACTACTTGGCGTCTCCTTCCTTGGAGGTCTCACCATTTAAACATAACATTTGATAACGTGTTGGTAAGGTGAGGTCTAGCTTGTCTCCACTAGGTCATCTTCATATGAATCCAGTGGGTATACGGTTTTGTTTTAGGGATAGTTCATTTTTTAATGACGGTTTTTAGCTGACATTCATGGAGAGAATGAATCCTTAGAACTGTGCCGCTAGTGAAAGGAAATCCTGTCTAAGAGTGTTTCTTTACAGAGCAGTGTCACACCATCCTTTGGGCCCTCTGCTGGAAACATAGAATCAAGTCTCAAATAATGCCTTTTAAATTGTCTCCTCTAGTATTATAGATGTAGGACAGTACTGTATCATACCTCTGTGAATGTAACATAGCTTGTACCTGCTTTATGATACGTAGTAGTGACCGTGCTTTATCAGAGCTGTTTTTTAATGATGTTGCTCAGAATGTTTTCTTTCCAGATGATGATTGAGAAGCTAATTAAAAAAAAAAACAGAAACAAAAAATGGTGCCAGGTACCACAAGAGTAACAGAACTGTGCTGTTTTCTGGGATTTTGTTTTTTACTTTTTTTTTTTTTTTTTTTTTTTGATAAGAGTGTGCTGGATGTCTCTACAATTTTGTTCAAATGACTGCAGAACCTGGAAAAGCTGTTGCTGCTATTGATGCATAACATACTGCTATTATTGGTCTTTTTATATAAATATAAATATATATACATATATATAATTTGAATTTTTTGGAAACTTTAGCTGTGCTGTCAACTTTGGAAAAACGTATCCCAGTTTACTGTGTTGAGTTGGCATTGTACAGAAATTAACAGCCATATTGGTCTAGAAATGTTGAACTTAATTTTTTTTTCCATTTGTACAGGGGTAACGCACTGTATTAAATATGTAAGGTCTTATCTACGTGGGTTTGATTACAAAAACTAATAAAGTATTCTCTAAATAATGAGTCTTGGAACTTCTAATCTATTCCAAAGTCGGAAGCAAGGCTTGTTAGTGTACCAAAGGTCCTAGCCGTTATCCAAAGAGTTAGGGACTGCCCTGAGGTCAAGAAGCTTAAAGCTCACTCAGTCAGAGGTGGTGTTGAGGGTAATAGTTACAGTTTCTGTTCTTGGGATGATCAAACTTTGATGGCAAGATGGCAGCAGGATGATCAGGAGTTAAAGGCCATTCTCATCTAGGTAGTAAGTTTGAGGCCCATCTGTATGTGTGTGAGACCTTGTCTTGGAGAAAACCTAGGGAGACACGTGTGGTAGTGCACGGCTGTAATCCCAGCACTCGGGAGGCAGGGGCAGGCAGCTCTGTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGCTCTCTTGAGTTCCAGGCCATTCAGTGAACTCCAGGACAGCCAGGCCTACACACAGAAATCGGGGTCGGGGGCAGCCTAGAACTGGAGAGTCAGATAAAAAAAATCTAAGATTGCTCTTGGTTTAAACTGCCAAATAGAAAAAATGTCTTACCATTCTTGGATAAAAATGGAAGGACCAGAAGTGGACCTGAATGTGTATTTCTCAGTATTTTCATTAGCATGTTCACAGTCATTAACGTTAATTACTGAGTTGGCAAAGCTGAGGGAGATTTTAATTGTTTATCCCTATATGTGGAACATAAAGGCTTCTAGAGAATTTTAGCAGAACTAACCACTGAATAATATATGTATCACTGAGTCAATATATTGTGGTTTCTAAACATTCAAGGACATTGGCTAAGCTTTTTAGGTCTGTGGTTTTCTGAATGTTGTGGCTTATTCTAGAGAATAATCAGGAGAAGGTGATGACAGGGTCAGAACCCCTGTTAAGAGGGTTTTGTCACATTGGCCTTCTTACTAAGTCACTGTCGCCCAACTGTTTTGTATATTCTAACCTTAAGTTCCTAAGTTTTAGGTCATAGAAGATGAAAAGCCTGTATAGCTTACAGTGTGTGTCTCTGCATGCATGTACATACTACTACACTGTGCTAAAATAAAACACCACTGATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225:ENSMUST00000182149:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=NA C2=0.968
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGTGGGAAGAGGACTC
R:
ACTTTCCCTACCCACCCATCC
Band lengths:
343-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types