MmuEX0037412 @ mm10
Exon Skipping
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:162670725-162676817:-
Coord C1 exon
chr1:162676691-162676817
Coord A exon
chr1:162675605-162675841
Coord C2 exon
chr1:162670725-162673656
Length
237 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTTTCACTCAGATT
3' ss Score
9.23
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCTACATCAACAAGTCCAAACAGCCAGTCTAGCAAAATGAACAGTGTTGTGTATCAGAAACAGTTCCAGTCAGCCCCCGCCACAGTGCGCATGGCACAGCCGTTTCCTGCACAGTTTGCACCCCAG
Seq A exon
ATTCTCTCTCAGCCTAACCTGGTCCCTCCATTGGTAAGAGCCCCACATACTAACACCTTCCCAGCGCCTGTACAGAGGCCACCAATGGCACTGGCCAGTCAGATGCCTCCTCCGCTGACCACAGGCCTCATGAGCCATGCTCGTTTGCCACATGTAGCCAGGGGTCCTTGTGGATCACTGTCTGGAGTCAGAGGTAATCAGGCCCAGGCTGCGTTGAAGGCTGAACAAGATCTGAAG
Seq C2 exon
GCAAAGCAGAGAGCAGAGGTTCTTCAGTCCACGCAGCGGTTCTTCTCTGAACAGCAACAGAACAAACAGATAGGAGGCAAAACCCAGAGAGTGGACAGTGATACAAGTAACCCTGAAACGCTGAGTGACCCTCCTGGCACCTGTCCGGAAAAAGTAGAAGAAAAGCCACCCCCTGCACCCACCATAACCACCAAACCTGTTAGAACTGGACCAATCAAACCTCAGGCCATCAAAACCGAAGAAACAAAATCGTAAAGGCTGTGGTTTATTGGGGATGGGTGGGTAGGGAAAGTGAAGTCAAATAATGCCAGCCAGCAGCCACAGGGGTAAAGTGGTCTGTGACATCATCCTGTGAGACACAAGGGGCATAGAGCATTTACAGTGACAGAGCTGCTGCACAGTGAGGCTCCACAGGCTCGCACCTCCGGTGTAACATTTGCATCTTCAGTTGGTTTGTATACAAGTACGTAAACAGTCTGTAAGTGCATACAGTTTAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
83%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.934 A=0.970 C2=0.968
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGTTCCAGTCAGCCCC
R:
CGGTTTTGATGGCCTGAGGTT
Band lengths:
308-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types