DreEX6044277 @ danRer10
Exon Skipping
Gene
ENSDARG00000057583 | prrc2c
Description
proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
Coordinates
chr20:15127179-15131509:-
Coord C1 exon
chr20:15131383-15131509
Coord A exon
chr20:15131065-15131289
Coord C2 exon
chr20:15127179-15127629
Length
225 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTTCACATGTTAGATG
3' ss Score
7.29
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGCGAGCTCCACAAGCCCTAGTAGTCAGTCTAGCAAGATGAACAGCATGCTTTATCCAAAACAGTTCCAGACAGGATCTGCAGGAATGCGCATAGCCCAACACTTTCCAGGACAGTTCAATCCACAG
Seq A exon
ATGTTGTCTCAAGCCAACATGGTGTCTCCACTGGTACGTCCACCCCATGCAAACTCTTTTCCTGGAGGGGTGCAGCGTTCAGCCATGGGTCCACCGATGTCTACTAACCTGACGGGAGGTCTGATGCCCCATCCCAGACCTCAACATCCTCCACGTGGCCCTTCAGGTCCACCTTTAGCCCCCCGTGGCACACAGGCAGCCCTGAAAGCAGAACAAGACTTAAAG
Seq C2 exon
GCTAAACAGCGAGCTGAGGTATTACAGTCAACCCACAAGTTCTTCTCAGAGCAACAACAGCTCAAGGCTCCAGTCAGCAAGCCCACCCGCATAGAAGGAGCTGGCAAACCCACTGACAGCATCACTTCGAATCACCAGGGGGCGCCATCCGACCGCGTGGAGTCCGACAAACCTGCACCTCTAGCAACAACCAAACCCATCCGAACGGGTCCGATCAAACCACAGGCCATCAAACCAGAAGAGGGCAAATAGTGTTTAATTACTTCAGAAAGGACAAAATGGATGGAAGGATGGACTGAGAGGCCAGATGTCAGGGGGGAGGGGGGGGCGACATACTACAGCACCTGAAATCATCAGAGAATTGTAGGGAAGTAGAGTGATGGAGGTTAATTTTACGAGGTGCTGTGCATTTTTCTCCCACTTACTGTGCGCTTTTTCCTCATCCTTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057583-'35-44,'35-43,36-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGCAGGAATGCGCATA
R:
CCCTCTTCTGGTTTGATGGCC
Band lengths:
299-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]