MmuEX0037412 @ mm9
Exon Skipping
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:164604230-164606948:-
Coord C1 exon
chr1:164606822-164606948
Coord A exon
chr1:164605736-164605972
Coord C2 exon
chr1:164604230-164604282
Length
237 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTTTCACTCAGATT
3' ss Score
9.23
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCTACATCAACAAGTCCAAACAGCCAGTCTAGCAAAATGAACAGTGTTGTGTATCAGAAACAGTTCCAGTCAGCCCCCGCCACAGTGCGCATGGCACAGCCGTTTCCTGCACAGTTTGCACCCCAG
Seq A exon
ATTCTCTCTCAGCCTAACCTGGTCCCTCCATTGGTAAGAGCCCCACATACTAACACCTTCCCAGCGCCTGTACAGAGGCCACCAATGGCACTGGCCAGTCAGATGCCTCCTCCGCTGACCACAGGCCTCATGAGCCATGCTCGTTTGCCACATGTAGCCAGGGGTCCTTGTGGATCACTGTCTGGAGTCAGAGGTAATCAGGCCCAGGCTGCGTTGAAGGCTGAACAAGATCTGAAG
Seq C2 exon
AAGAGAGCTGTGGGAAGAGGACTCAGCCACAAGACATTTGGTCCTAGGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225-'42-51,'42-50,45-51
Average complexity
C2
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.975 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACATCAACAAGTCCAAACA
R:
CAACACCTAGGACCAAATGTCT
Band lengths:
180-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: