HsaEX0007660 @ hg19
Exon Skipping
Gene
ENSG00000117523 | BAT2D1
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:24903]
Coordinates
chr1:171557518-171562649:+
Coord C1 exon
chr1:171557518-171557644
Coord A exon
chr1:171558508-171558744
Coord C2 exon
chr1:171560726-171562649
Length
237 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTTTTCACTCAGATT
3' ss Score
8.49
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCTACTTCTACAAGTCCGAACAGCCAGTCCAGCAAAATGAACAGCATTGTCTACCAGAAGCAGTTCCAGTCAGCCCCTGCCACTGTGAGAATGACACAACCATTTCCTACACAGTTTGCACCCCAG
Seq A exon
ATTCTCTCCCAGCCTAACCTGGTCCCTCCATTGGTAAGAGCCCCACATACTAACACCTTCCCAGCGCCTGTTCAGAGGCCACCAATGGCACTGGCCAGTCAGATGCCTCCTCCGCTGACCACAGGCCTCATGAGCCATGCTCGTTTGCCACATGTAGCCAGGGGTCCTTGTGGATCACTATCTGGAGTCAGAGGTAATCAGGCCCAGGCTGCGTTGAAGGCTGAACAAGACATGAAG
Seq C2 exon
GCAAAGCAGAGAGCAGAGGTTCTTCAGTCCACGCAACGGTTCTTCTCTGAACAGCAACAGAGCAAACAGATAGGAGGAGGCAAAGCCCAGAAAGTGGACAGTGATTCAAGTAAACCTCCTGAAACACTGACCGACCCTCCTGGGGTCTGTCAGGAAAAAGTAGAAGAAAAGCCACCCCCTGCACCCTCCATAGCCACCAAACCTGTTAGAACTGGACCAATCAAACCTCAGGCGATCAAAACCGAAGAAACAAAATCTTAAAGGCTATGGTTTATTGCAGGGGATTGGGAGGGGGGCGGGAAAACATGGAGAATTAAGTCAGATAATGCTGGCAGCCAAAGGGGCAAAATGGCCTGTGACATTATCCTGTTCAGAGCTTGGAGATGTACAAGGGACATAGGAGCAATTTACACTGACACACAGCTGCTGTACCAGTGAAAACGAGGCTTTGCAAGCTTGTACCTACTATATAACATGTGCTTGGTTGATGGCCATGCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523_MULTIEX2-1/2=C1-C2
Average complexity
ME(1-2[96=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.951 A=0.987 C2=0.998
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCCACTGTGAGAATGAC
R:
TTCGGTTTTGATCGCCTGAGG
Band lengths:
298-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)