MmuINT0024002 @ mm10
Intron Retention
Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:162674099-162676817:-
Coord C1 exon
chr1:162676691-162676817
Coord A exon
chr1:162674152-162676690
Coord C2 exon
chr1:162674099-162674151
Length
2539 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CTGATGCTCTTCCCCTGCAGAAG
3' ss Score
10.66
Exon sequences
Seq C1 exon
GGCTACATCAACAAGTCCAAACAGCCAGTCTAGCAAAATGAACAGTGTTGTGTATCAGAAACAGTTCCAGTCAGCCCCCGCCACAGTGCGCATGGCACAGCCGTTTCCTGCACAGTTTGCACCCCAG
Seq A exon
GTAGGCAGACCCCAGGGGGTGAGTACAGTGCTTGTAATGATGGCTGGTTTGACTAAGGGTGTGGCTTTACAGTCACCATGTAGGTGAGCAGTTACGGTGTGCACCTGGGAATGAAAACTTGTCTGGTTTTAAAAATATGATACTGAAAAATAGATGCAGTAGTAGTTTAGTTTTATAGCAGACATGAGAAATGCTCAAGATCCCCACACGGCTCTGACAGTTTCAATCCTGTTTCTTTTGTCTTTTTGGAAGCAGTTTGATTTTCAGTGCAGGGTCCCCGTGCTTAGGTTTCCAGACCCACCCTCAGGTGGCTTTGGTCCTTATGCTACCTGCACAGTTGAAGAAAGTTTGCGGGAAATAATGTGCAGGCCTGAGTTTCTCCTCCCCTGGCTGAATCATTGGAGACTGGTTAAGATTAGTAAGTCACAAACTAGGATTGGTTCCCAAGGAACACATTTGTTGAGTTACTGTAACTGTACCTTCAGATTATGTTTAGTATAGAAGTGGGCTTTTCTGCAATTGTCCCTTTCTCTCTACCCCTTAGAGTTTCCATCTGAAGTGCCATAGCATGCTTTGCCTAATTTTTCTGTTAAACTTGATAAGCATGGCCCATTTATTCTTTGTCCTTATTAATGGAATGGCACGATCCAAAAACTTCCACTGGCAGAATGGGCACAGATTTACTCTGGGATAAGCCAGCCTGATCTAGTTGGCCTTTTTTTTCCTTTCCTTTTTTTTTTTTTCTTTTTTTCTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTTCCTTTTTTCTTTTTTTTTTTTTTTTAACAGTTCAATGTTGTATGTTTTGTTTTTTTTCACTCAGATTCTCTCTCAGCCTAACCTGGTCCCTCCATTGGTAAGAGCCCCACATACTAACACCTTCCCAGCGCCTGTACAGAGGCCACCAATGGCACTGGCCAGTCAGATGCCTCCTCCGCTGACCACAGGCCTCATGAGCCATGCTCGTTTGCCACATGTAGCCAGGGGTCCTTGTGGATCACTGTCTGGAGTCAGAGGTAATCAGGCCCAGGCTGCGTTGAAGGCTGAACAAGATCTGAAGGTTAGTACAGTATTGATGGCCAGCAGAGCAAGAGTCTGTCTCTGAACCCTGTCGGAAATGCCCTGGCCCATAGCCGTGTATCCAGGCATTCGTTGTCTTTACCAGACTTAACCAAGCTAACTGCTTTTTGTTCATCCCAGCCCCCTGTTTGTTTTTGTTTTTGTTTTTTTTCTCCCTTCCATCCTTACCTTTTCCTCCTTTTTATGACCCCTTCCTTTGCCACTATAGTCAGAAAACAAATTAACATTTTAAACTATATTCAAATGGATTGCTTGTGAAATAAGTATCTGAGGGAAATCTGAGTTTGGATACAGTATTTTAAATATTAAAAAAAAGTAATATGGATTGTTATTACCAGTCACCCTGTATTATTTCCCTTTTTTTTTTTTTTCCTACCTTCCTGCCCTCCCTCCCCATCCCAACTTAATACATAATCATGATTTTGTGAACTCTGGAATGGGTAAGACATGTTAGCTACCTTGATTCTTATCCCTTCAGAAATCATTTGAGTAATTTTCATCTTAAACATTCCACATCCTTTTTTTGCATGCCACCTGTGGTGGCCATATTCCAGAATGCAATTATAGATGAACTCAGAAAAGCACTTTGGGATCCTTCATGGTAAAAGGCACAAACAGACATGGGTTTGCTGAGGCCACTAGGAGTCTGTGTGGGGACAGTTTTTAGCATAATTCTCACCCGTCTTCCTATACAGCCAATTTGAGCTTGTTTTTCTAACTACCTAGGGCTGACTTTAAGATTCAAGAGCGGTTTTCTCACCACGTAGATTAGGCTAGAGCAGAGATGAGCTTTGTGCGTATGAGCAGGAGTGTGCACAGTAAGGCTTCACTCTGAGTTAGAGGCATGTTTGTGATAATACTGCTAAAGAAGTCAGTTAACTGACTAAAGTCCCTTCGTGTTTCTAAAGCTTAGGAATCCAATTAAAGGTTACCCTCTAGGAGACTGCCTAGGACCCATTACTCAGTTTTGTTAGGCTGTGTGCCTAGGGTTTCCGTCTGTCTGTTACTACTAAAAAGTGCTTGCACCAAAAGCTTAGCAGATTGTGTAGCCTTCCACTCCCGGCTAATTGCCACTTGATCTTTAAACATTCTTATGTTAAAAAATGACATTAGAACATAATAATATTAGTGGGGTGGGAGAGTATAAATTTCTTATAAACTGTTTTAGTTAGTATAGGTTTACCAGTAGAACATGAAGGAGCTCTTGTGGTTTTTGGTTTTGTTTTGTTTTTTATTATATGCAAAAGGAGTAGAAAGTTAAGTTTAATTGGATATAGTATAGCACTATAATTACAGGTTAATGTAAGTATATTCTTTGGGGCACATTGTCATTGAAACGGATTATTTACCAGCTCAGAATGTGGTAGGAGCTATCAGAACTTAGTGATCAAGTGAAGTCGTAGTTACTAATTTCTGATGCTCTTCCCCTGCAG
Seq C2 exon
AAGAGAGCTGTGGGAAGAGGACTCAGCCACAAGACATTTGGTCCTAGGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225:ENSMUST00000182149:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.934 A=NA C2=0.856
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types