BtaINT0118653 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001821 | PRRC2C
Description
Bos taurus proline-rich coiled-coil 2C (PRRC2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001206655]
Coordinates
chr16:39933640-39934844:+
Coord C1 exon
chr16:39933640-39933766
Coord A exon
chr16:39933767-39934607
Coord C2 exon
chr16:39934608-39934844
Length
841 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GTTTTGTTTTTTTCACTCAGATT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GGCTACTTCCACAAGTCCGAACAGCCAGTCCAGCAAAATGAACAGCATTGTCTATCAGAAGCAGTTCCAGTCAGCCCCTGCCACTGTGAGAATGGCACAACCATTTCCTACACAGTTTGCACCCCAG
Seq A exon
GTGGGCAGATACAAATGAGAAATGAGTATTACTTACTTGCGAGTGATTGCTAATCTGGCTAATTCTCTGATTTTATAATCCTGCCATATTATAACCAGTTTAGAAACAGCTTTTAGTAAATTTATGACATTCAAATATATTCTGTACAATTTTTAGCTAGACACAAGTAGTAACCATATAGTTCTAAAGCAGACAATTGAAATATAGTCAAAAGATTCCCCACACAGCTCTAAAAATTTATTTCAGTCCCAAACCTTTTATCTTTTGAAGAAGCTGACTTTTCAGAGAAGGGTCCCAGTGCTTAACATTTTCTAGTTTAAAAGTTGGGGAGGGGGGTTTGGTTTTTGTTTTCTAAAGGTAACTATATGCAATTGATACAGAAATTCTAAAAGACATTCTAATATATGTGTAAACATGTTGGCTTCTCTTCCCTTCGCTAATCCTATGGAAGGACTAAAGTTGATAAGAACTCTCATATATTTGTTGATTAGTAGTATTTTCATTTATCTTCAGATTATAGTTGGTATATGTGCCTTTTCTGCAATTATATCTTTTTAAAAAGATATCCTATTTAATAGCTTTTCTATTTCCCCTTCAGAATTTGTAGCTGAAATGCTAGAACCAACTGAAGTGCCATAGCTTGCTTTGCCTAATTTTTGTCAGATTCTCCAAGCATGGAGAATGTTTCTTCTTGGTCCTGTAATAGAATGGCACAAACCCATACACTTCCTTTCACTGGCAGAATGGGCACAGATTTACTCTGGTATAAGCCAACCTAGTCTAGTTGGCAATTTTTTTTTTTTAACAGTTCAATGTTGTATGTTTTGTTTTTTTCACTCAG
Seq C2 exon
ATTCTCTCTCAACCTAACCTGGTCCCTCCATTGGTAAGAGCCCCACATACTAACACCTTCCCAGCGCCTGTTCAGAGGCCACCAATGGCACTGGCCAGTCAGATGCCTCCTCCGCTGACCACAGGCCTCATGAGCCATGCTCGTTTGCCACATGTAGCCAGGGGTCCTTGTGGATCACTATCTGGAGTCAGAGGTAATCAGGCCCAGGCTGCGTTGAAGGCTGAACAAGACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001821:ENSBTAT00000002380:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=NA C2=0.975
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCACAAGTCCGAACAGC
R:
TCTTGTTCAGCCTTCAACGCA
Band lengths:
353-1194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development