DreEX6044276 @ danRer10
Exon Skipping
Gene
ENSDARG00000057583 | prrc2c
Description
proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
Coordinates
chr20:15131065-15131786:-
Coord C1 exon
chr20:15131683-15131786
Coord A exon
chr20:15131383-15131509
Coord C2 exon
chr20:15131065-15131289
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTTTGTGTTCTCAGGGC
3' ss Score
11.01
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
ATGTGTGAGATGGATCTGAAGCTCTTCAGTGGTGGAATTGATGTGAAACCTGGAACGCCACCTGTCAGCGCCAGGAGCACCACCCCCACCTCTAGCCCTTATAG
Seq A exon
GGCGAGCTCCACAAGCCCTAGTAGTCAGTCTAGCAAGATGAACAGCATGCTTTATCCAAAACAGTTCCAGACAGGATCTGCAGGAATGCGCATAGCCCAACACTTTCCAGGACAGTTCAATCCACAG
Seq C2 exon
ATGTTGTCTCAAGCCAACATGGTGTCTCCACTGGTACGTCCACCCCATGCAAACTCTTTTCCTGGAGGGGTGCAGCGTTCAGCCATGGGTCCACCGATGTCTACTAACCTGACGGGAGGTCTGATGCCCCATCCCAGACCTCAACATCCTCCACGTGGCCCTTCAGGTCCACCTTTAGCCCCCCGTGGCACACAGGCAGCCCTGAAAGCAGAACAAGACTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057583-'34-43,'34-42,35-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCACCTCTAGCCCTTAT
R:
GTCTTGTTCTGCTTTCAGGGCT
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]