HsaEX6034893 @ hg38
Exon Skipping
Gene
ENSG00000117523 | PRRC2C
Description
proline rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr1:171587648-171593511:+
Coord C1 exon
chr1:171587648-171587751
Coord A exon
chr1:171588379-171588505
Coord C2 exon
chr1:171591587-171593511
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGTAATGGCTTCTTTCCAAGGGC
3' ss Score
3.51
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ATGTCTGAAATGGAACTAAAAGCCTTTGGAAGTGGCATTGATATAAAACCAGGCACACCTCCAATCGCTGGTAGAAGCACCACACCAACATCTAGTCCCTTCCG
Seq A exon
GGCTACTTCTACAAGTCCGAACAGCCAGTCCAGCAAAATGAACAGCATTGTCTACCAGAAGCAGTTCCAGTCAGCCCCTGCCACTGTGAGAATGACACAACCATTTCCTACACAGTTTGCACCCCAG
Seq C2 exon
GCAAAGCAGAGAGCAGAGGTTCTTCAGTCCACGCAACGGTTCTTCTCTGAACAGCAACAGAGCAAACAGATAGGAGGAGGCAAAGCCCAGAAAGTGGACAGTGATTCAAGTAAACCTCCTGAAACACTGACCGACCCTCCTGGGGTCTGTCAGGAAAAAGTAGAAGAAAAGCCACCCCCTGCACCCTCCATAGCCACCAAACCTGTTAGAACTGGACCAATCAAACCTCAGGCGATCAAAACCGAAGAAACAAAATCTTAAAGGCTATGGTTTATTGCAGGGGATTGGGAGGGGGGCGGGAAAACATGGAGAATTAAGTCAGATAATGCTGGCAGCCAAAGGGGCAAAATGGCCTGTGACATTATCCTGTTCAGAGCTTGGAGATGTACAAGGGACATAGGAGCAATTTACACTGACACACAGCTGCTGTACCAGTGAAAACGAGGCTTTGCAAGCTTGTACCTACTATATAACATGTGCTTGGTTGATGGCCATGCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117523-'86-109,'86-102,88-109
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=0.980 C2=0.998
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTCCAATCGCTGGTAGA
R:
GTTTGGTGGCTATGGAGGGTG
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains