BtaEX0028708 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031447 | PRSS45
Description
protease, serine, 45 [Source:HGNC Symbol;Acc:HGNC:30717]
Coordinates
chr22:53301823-53303497:+
Coord C1 exon
chr22:53301823-53301970
Coord A exon
chr22:53302205-53302479
Coord C2 exon
chr22:53303334-53303497
Length
275 bp
Sequences
Splice sites
3' ss Seq
GGGCTCTGTGTCTCCTGTAGCAC
3' ss Score
8.19
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTTGTGGCCAACCTTGGTGGCCGAAGAATTTGGACCTGTCTCGCCATTGGCCCTGGGAAGTGAGCCTCCGAGTGGGAAATGAGCACGTGTGTGGAGGGGCCCTCATTGACCTCAAATGGGTGGTGACTGCTGCCCACTGCATCCAAGG
Seq A exon
CACAAAAGAGTATTCAGTGATTCTTGGCACCTCCAAGCTGAAACCCCCGAACTCCACAAGAACCCTCTTGATCCCTGTGAGGGACATCATTATGCACCCCAAGTACTGGGGCCGGACCTTCATCATGGGTGATGTGGCCCTTCTCCAACTTTACAATCCTGTCATCATCAGCAAGTATGTGCAGCCCATCTGCCTTCCAGAGCCCAATTACAGCCTGAAGGTTGGGACACAGTGCTGGGTAACTGGCTGGGGCCAGGTTAAACAGCGCTTCTCAG
Seq C2 exon
CCAACTCCACGCTGGCCTCAGAGCTGCAGGAAGCCGAGGTGTTTATCATGGACAACAAGAAGTGTGACCAGATTTACCGCAAGAAATCCCACATCCCCCGCGTTGTCCCCCTTGTGCTGGGGGATATGATTTGTGCCACCAATTACAGAGAAGACTTGTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031447-'3-7,'3-5,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(16.8=78.0)
A:
PF0008921=Trypsin=FE(39.7=100)
C2:
PF0008921=Trypsin=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTTGGTGGCCGAAGAAT
R:
GTCTTCTCTGTAATTGGTGGCACA
Band lengths:
295-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development