RnoEX0070368 @ rn6
Exon Skipping
Gene
ENSRNOG00000029649 | Prss45
Description
serine protease 45 [Source:RGD Symbol;Acc:1303021]
Coordinates
chr8:119115735-119117733:+
Coord C1 exon
chr8:119115735-119115882
Coord A exon
chr8:119116322-119116541
Coord C2 exon
chr8:119117570-119117733
Length
220 bp
Sequences
Splice sites
3' ss Seq
GGGCTCTTGCCTCCCTGCAGCAA
3' ss Score
8.62
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
Exon sequences
Seq C1 exon
TTTGTGGCGCACCCTGGTGGTCTGACAGCTTGGAGGAGCGCCACCATTGGCCCTGGGAAGTGAGCCTTCAGATAGAAAATGAGCACGTGTGTGGAGGAGCCCTCATTGATCAGAGCTGGGTGGTGTCCGCAGCTCACTGCATCCAGGG
Seq A exon
CAACAAAGAATACTTAGTGATGTTGGGTAGCAGCACACTCCAGCCCAGCGGCTCCCCCTGGGCCCTGAAGATTCCCGTGGGTGACATCATCATGCATCCCAAGTACTGGGGCCAGAACTTCATCAGAAGCGATATTGCCCTTCTCTGTCTTGAAACCCCTGTCACTTTCAACAAGTACATACAGCCCATCTGTCTCCCAGAGCACAACTTCAACTTGAAG
Seq C2 exon
CCAAGTTGACACGGAGTCTAGAGCTTTGGGAGGCTGAGGTATCCATTGTTGACAACAAGAACTGTGACAGAGTCTTCCACAAGAAGACCTTCTATCCCCAAGTTATCCCCCTTATCCGGAAGAACATGATCTGTACCACCAATCATAGGGAGAACCCGTGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029649-'2-6,'2-5,3-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.2=86.0)
A:
PF0008921=Trypsin=FE(39.0=100)
C2:
PF0008921=Trypsin=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGGTCTGACAGCTTG
R:
GGTTCTCCCTATGATTGGTGGT
Band lengths:
292-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]