MmuEX6069408 @ mm9
Exon Skipping
Gene
ENSMUSG00000047257 | Prss45
Description
protease, serine, 45 [Source:MGI Symbol;Acc:MGI:3605764]
Coordinates
chr9:110740925-110743054:+
Coord C1 exon
chr9:110740925-110741072
Coord A exon
chr9:110741526-110741800
Coord C2 exon
chr9:110742891-110743054
Length
275 bp
Sequences
Splice sites
3' ss Seq
GGTTCCTGAACTCCCTGCAGCAA
3' ss Score
5.73
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTTGTGGCACACCCTGGTGGCCAGACAACTTGGAGGAGAGCCACCACTGGCCCTGGGAAGCGAGCCTTCAGATAGAAGATAAGCACGTGTGTGGAGGAGCCCTCATTGATCGAAGCTGGGTGGTGTCTGCGGCTCACTGCATCCAGGG
Seq A exon
CAACAAGGAGTACTCAGTGATGTTGGGTAGCAGCACCCTCCACCCCAACGGCTCCTCCTGGACCCTGAAGATTCCCGTGGGTGACATCATTATTCATCCCAAGTACTGGGGCCGGAACTTCATCAGAAGCGACATTGCCCTTCTCTGCCTTGAAACCCCTGTCACTTTCAACAAGTACGTGCAGCCCATCTGTCTCCCAGAGCACAACTTCAACTTCAAGGTCGGGACGAAGTGCTGGGTGACTGGCTGGGGCCAGGTTAAGCAGCACTCCTCAG
Seq C2 exon
CCCAGTTGACACCGGCTCCAGAGCTTTGGGAAGCTGAGGTATTCATTATAGACAACAAGAATTGTGACAGCATTTTCCACAAGAAGACCTTGTATCCCCAAGTTGTCCCCCTTATCCGGAAGAACATGATCTGTACCACCAATTATGGGGAGGACTTGTGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047257-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(17.5=82.0)
A:
PF0008921=Trypsin=FE(39.3=100)
C2:
PF0008921=Trypsin=FE(23.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGACAACTTGGAGGAGA
R:
AGCACAAGTCCTCCCCATAAT
Band lengths:
292-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: