BtaEX0029438 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94103009-94142483:+
Coord C1 exon
chr11:94103009-94103082
Coord A exon
chr11:94122333-94122532
Coord C2 exon
chr11:94142249-94142483
Length
200 bp
Sequences
Splice sites
3' ss Seq
TTATGGTTTTTGTTTTTCAGGCA
3' ss Score
10.08
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGCTGGGGAGGCCCAGGCGGCGGAGCCTCCGGGACGGCGAACGGCGGGCGGCGGAGGAGGAGACGGCGGGTCGG
Seq A exon
GCATTTTTAAAATATTTAATCATTCATGAGTTGAGCTTCATTCTTGAGTCATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCCTCAGACTCTGTGTCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGGCAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGAAAACAGGACTCAAG
Seq C2 exon
ATTATAGGGAATGGAAGTGAACAGCAGCTGCAAAAAGAGCTAGCAGATGTGCTGATGGATCCTCCAATGGACGACCAGCCAGGGGACAAGGAGCTTGTGGAAAGGTCACAGCTGGATGGCGAAGGAGATGGGCCTCTTTCTAATCAACTCTCAGCTTCATCCACCATTAACCCTGTGTCATTAGTAGGGCTCCAGAAACCAGAGATGAGCCTGCCAGTGAAACCTGGACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-'3-6,'3-2,8-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.900 C2=0.899
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development