HsaEX0051787 @ hg19
Exon Skipping
Gene
ENSG00000011454 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:17155]
Coordinates
chr9:125703288-125746998:+
Coord C1 exon
chr9:125703288-125703372
Coord A exon
chr9:125719290-125719488
Coord C2 exon
chr9:125746764-125746998
Length
199 bp
Sequences
Splice sites
3' ss Seq
TTATGGTTTTTGTTTTTCAGGCA
3' ss Score
10.08
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGGGACAGGGCGGTTTGGGAGGCCCAGGCGGCGGAGCCTCCGGGACGGCGAGCGGCGGGCGGCGGAGGAGGAGACGGCAGGTCGG
Seq A exon
GCATTAAAAAATATTTAATCATTCATGTGTTGAGACTCATTCTTGAGTTATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCTTCAGACTCAGTATCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGGCAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGAAAACAGGACTCAAG
Seq C2 exon
ATTGTAGGGAATGGAAGTGAACAGCAGCTGCAAAAAGAGCTAGCAGATGTACTGATGGATCCTCCAATGGACGACCAGCCAGGGGAAAAGGAGCTTGTGAAAAGGTCACAACTGGATGGTGAAGGAGATGGGCCTCTTTCTAATCAGCTCTCCGCTTCATCCACCATTAACCCTGTGCCATTAGTAGGGCTCCAAAAACCAGAGATGAGCCTACCAGTGAAACCTGGACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011454_MULTIEX1-2/5=C1-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.920 C2=0.874
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAGACGGCAGGTC
R:
CAGGTTTCACTGGTAGGCTCA
Band lengths:
247-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)