RnoEX0073388 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21698032-21724414:+
Coord C1 exon
chr3:21698032-21698218
Coord A exon
chr3:21721366-21721564
Coord C2 exon
chr3:21724192-21724414
Length
199 bp
Sequences
Splice sites
3' ss Seq
TTATGGTTTGTGTTTTTCAGGCA
3' ss Score
9.81
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATTGTGGGCGGGGCGCGGGGCGAGGTTGGGGAATCCGGCCGCGGAGAGTCGGCTCTGTGAGCTCCGCAGTTGCGGCTCTTCTGTAGCAGGTGGGCCAGAGCTCTGTTCTTCGCGGCTGCAGTCACGAAGGGCTCCCGCCGGCCGTTGTCTGCATGGGCCTGAGCAGCCTGTCTGCGAGCAAGCCGTG
Seq A exon
GCATTTAAAAAATTTTAACCATTCATGAGTTGAGCCTCATTCTTGAGTTATGGATGACAAGGCCTCTGTTGGAAAAATCAGTGTCTCTTCAGACTCAGTGTCCACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGGCAAGGAGATGAGACACCATCTACAAATAATGGGAGTGATGATGAGAAGACGGGACTCAAG
Seq C2 exon
ATTGTAGGGAATGGGAGTGAACAGCAGCTTCAGAAAGAGCTAGCAGATGTGCTGATGGATCCTCCCATGGACGACCAGCCAGGGATGGAAAGGTCACACCTGGATGGGGAAGGAGATGGGCCTCTTTCTAATCAGCTCTCAGCTTCATCCACCATTAATCCTGTGCCCCTGGTAGGGCTTCAGAAACCAGAGATGAGCCTGCCAGTGAAATCTGGACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402-'1-2,'1-0,11-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.920 C2=0.950
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCGGCTCTTCTGTAGCAG
R:
AAAGAGGCCCATCTCCTTCCC
Band lengths:
246-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]