BtaEX0029840 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010291 | RBAK
Description
Bos taurus RB-associated KRAB zinc finger (RBAK), mRNA. [Source:RefSeq mRNA;Acc:NM_001191256]
Coordinates
chr25:39080280-39087277:+
Coord C1 exon
chr25:39080280-39080775
Coord A exon
chr25:39081748-39081805
Coord C2 exon
chr25:39087151-39087277
Length
58 bp
Sequences
Splice sites
3' ss Seq
AACTGCTTCCCTTCCTCTAGGTA
3' ss Score
10.82
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CGCACGCATACTGCCTCGGCGCCTCTGTCGCTTCCTGTCGCTGTCCGGGTCACCACTCACCCTCGTTCCCAGGCTCTGGCCTCCGGCAGGCGGGCATTCCGGGGCCTGCGGGGCTGGAACGCCGTTCCGCCGTGCCGGCATCCAGCGGGCGCGGGCTGTGCGCGCGAGGATTCTCGCGGGCCGGGCAGAGGCTGGAGCGGAGACCCTCAAGCTCGAGCCCCGGAGCCCTCGGGCTGGGTCGGAGAGGCCGGACAGGTGGCGGCGGCGGCTAAGGAGCGGCGGGGCTCGGGCCCGATCGTCTGCTGCGCACTGAACTGTGAAGCCCTGGGAGGGACGTTGGCCTGAGGGGAGCTTGTCCCGTAGGCCCAAAGCCATCTCCTCGCCCGCAGCCGCCTCGGGAGGCGGAGAGGAAGGACTCGGAGAGAAGAGCGCGCCGAAGCAGCAGCCCCCGGCCAGAGCCTGGGGAGCCCGGGGCCGGTCAGCGAGTCCCGACGAG
Seq A exon
GTACACCGGTTCACAGTCTAGCTTTTTCCAAGAGCAGCAGAACATGAATGAATCCCAG
Seq C2 exon
GGGTCAGTATCGTTCAGGGATGTGGCTGTGGACTTCACCCAGGAGGAGTGGCAGCAGCTAGACCCTGAGGAGAAGATGACCTACAGGGACGTGATGCTGGAGAACTACAGCCACCTTGTCTCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010291-'0-3,'0-1,1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=0.046
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGAGGAAGGACTCGGAG
R:
GTGAAGTCCACAGCCACATCC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development