HsaEX0073008 @ hg19
Exon Skipping
Gene
ENSG00000164631 | ZNF12
Description
zinc finger protein 12 [Source:HGNC Symbol;Acc:12902]
Coordinates
chr7:6737316-6746554:-
Coord C1 exon
chr7:6746063-6746554
Coord A exon
chr7:6744790-6744854
Coord C2 exon
chr7:6737316-6737442
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTTGGGTTTTCCTTCCCCAGATC
3' ss Score
10.48
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCAGGTCACCGCTCGCCCTAGTTCCCAGGCTTTGGCCTCCGGTGGGCGAGAATCGCGGAGCCTGCGGGGCTGGGCGCCGAAGAGCCGGGCCGGCACCCAAGCGGGCGCGGGGCTGTGCGGGCCAGGCGGAGGCTCAAGCGGGGATCCCCGAGCACGACCCCCGGAGCCGACGGCGCTGGGGCCCAAGGGGCCGGCCGGGCGGTGACGACGGCGGAGGCGAAGGGGCGGCGGGACCCGGGCCCGGCCCGTGTGCGTCCTCGACGGCCCGGCCCCGGCTCCGCAGGACGGTGAGCCCCAGGGAGACGGATCTGGGCTCCGGGAGGGACGCCCCGCCTGGATTTGTCCCGTAGGCCCGGCCCGGGCCCCTCTGGAGCAGAACGGCCTTGGTGAGGTGGACAGGAAGGGACCTCGCGAGCAGACGCGCGCCCGCGACAGCAATCCCGCCCCGGCCTGTCGGGAGCGGTGGGGCAGAGGCTGCGGAGCCCCAGGAGG
Seq A exon
ATCTGCCTCCGCTTTCACAGTCCTCCAGATTTTTCCAAGAGCAGCAGAAAATGAATAAATCCCTG
Seq C2 exon
GGGCCAGTGTCATTCAAGGACGTGGCTGTGGACTTCACCCAGGAGGAATGGCAGCAGCTGGATCCTGAGCAGAAGATAACTTACAGGGATGTGATGCTGGAGAACTACAGCAATCTAGTTTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164631-'0-6,'0-0,1-6
Average complexity
C1
Mappability confidence:
90%=100=89%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGGATTTGTCCCGTAG
R:
GTCCTTGAATGACACTGGCCC
Band lengths:
183-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)