MmuEX6022311 @ mm10
Exon Skipping
Gene
ENSMUSG00000029587 | Zfp12
Description
zinc finger protein 12 [Source:MGI Symbol;Acc:MGI:99157]
Coordinates
chr5:143235163-143240080:+
Coord C1 exon
chr5:143235163-143235379
Coord A exon
chr5:143236254-143236316
Coord C2 exon
chr5:143239954-143240080
Length
63 bp
Sequences
Splice sites
3' ss Seq
CGTTGTTTTTCCTTCCCCAGACC
3' ss Score
11.21
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ATGCTCGCGCAAGCGCACGTCCGCTGCGCTGGCCTGGCTTCCTGCGGTCTGTGTCTCTACGCTCGCAGCTTTGACTTGCGCGAGCTGGAGTCGCGAGCCTGCGGGCCGAGGCCGGTGCGTCCGGGTCGGCAGCAGGCGAACGCAGCTTTGCAGGCCGGGGAGGCCGAGGGCCGGGCTGACGGGGGCAGCGAGACCCGGGCCCGGCGCGGCCTCCTAG
Seq A exon
ACCCGGCTGCATTAGTCCTTCTACAGACTTTTCCTACTGCAGCGGAAGATGAATACATCCTTA
Seq C2 exon
GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACCCTGAGGAAAGGACGACATACAGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029587-'0-2,'0-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.151
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAACGCAGCTTTGCAG
R:
GTCCAGCTGCTGCCACTC
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types