BtaEX0041096 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039782 | ZNF12
Description
zinc finger protein 12 [Source:HGNC Symbol;Acc:HGNC:12902]
Coordinates
chr25:39055588-39060347:-
Coord C1 exon
chr25:39060247-39060347
Coord A exon
chr25:39059206-39059270
Coord C2 exon
chr25:39055588-39055688
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACCTGCGTTTCCTCCTTCAGGTC
3' ss Score
13.67
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CGGGAGGCGGAAAGGAGGGACTCGGGGAGAGGAGCGCGCCGCAGGAGCAGCCCCCGGCCGGAGCCTGGGGAGCCCGGAGCCGGTCAGCGAGTCCCGACGAG
Seq A exon
GTCCGCCTCTGCTTTCACAGTCGTGCAAGTTATTCCGAGAGCAGCGGAAAATGAATCAATCTCTG
Seq C2 exon
GGGTCAGTGTCATTCAGGGACGTGGCCGTGGACTTCACCCAGGAGGAGTGGCAGCACCTAGACCCTGAGCAGAAGACGACCTACAGGGACGTGATGCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039782-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCGGAAAGGAGGGAC
R:
TAGGTCGTCTTCTGCTCAGGG
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development