RnoEX6063502 @ rn6
Exon Skipping
Gene
ENSRNOG00000001099 | Rbak
Description
RB-associated KRAB zinc finger [Source:RGD Symbol;Acc:1562875]
Coordinates
chr12:13428685-13438607:+
Coord C1 exon
chr12:13428685-13428916
Coord A exon
chr12:13430025-13430083
Coord C2 exon
chr12:13438059-13438607
Length
59 bp
Sequences
Splice sites
3' ss Seq
GTGACCTTTTCCTCCAGCAGGTC
3' ss Score
8.27
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CGCGTTCCTGTGCGTGTGCAGGGCCACTGCGCCGCTGTGACTCCTGCAGGTCCGTCGTCGAGGCTACCTTCCTTCCCACAGCTTTTGCACCCGCTAAGCTGGAGTCGCCGAGCCTGCGGGAACGAGACCGGAGCTTCCGGGGCGGCAGCGAACAGACTCAGCTGTGCTGGCCTGGGAGGCCTAGAGGGAGCTCGGCGCGGAGGACGACAGTGGCGGCGGGGCCGTCTGCTGG
Seq A exon
GTCAGTCGTCAGTGTTGTCTACGGTTTCCCAAGAGGAGCAAAAGATGAGCATATCAAAG
Seq C2 exon
GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACTCTGAGGAGAGGACGACCTACCGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGGGTGAGGGTCGCTTGCTTCCTAAACACTGAATTTAATGATTTGTCTTTGTGTTTGAAGGAACAAGTGCTAAGACTCTTAGTCCTTTTGGGTAGACATCGGGTATGTCTTTACTGCTCCATTGAATGAGCCTACGTTTCTCCCTTTTGTAGTACTGGAGATTGACCCCAGAGCCTCCTGCATGGTAGGCTACAGCCCTGTACACAAAAGGCTCTGCTTTTACTTGGTAAACACAGGCAAAGCCTTAATGTAACTCATGGTGCAGTTTCCTATACCACAGTGGTTCTCCTATACCACAGTTGGTCCAAACCTCCTTTTCTTGTTAACAGGGTATGATGTCACCAAGCCAAACGTGATTATTAAGTTGGAACAGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001099-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCTAGAGGGAGCTCG
R:
GTCGTCCTCTCCTCAGAGTCC
Band lengths:
137-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]