HsaEX1028878 @ hg38
Exon Skipping
Gene
ENSG00000272391 | POM121C
Description
POM121 transmembrane nucleoporin C [Source:HGNC Symbol;Acc:HGNC:34005]
Coordinates
chr7:75475062-75486271:-
Coord C1 exon
chr7:75485971-75486271
Coord A exon
chr7:75484198-75484300
Coord C2 exon
chr7:75475062-75475188
Length
103 bp
Sequences
Splice sites
3' ss Seq
GGTGATTTCTGCCTTTGCAGGCC
3' ss Score
7.8
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCATCGCTTGCTCTCGTTCCCAGGCTTTGGCTTCTAGTGGACGAGAATCACCGAGTCTGCGGGGCTGGATGCTGACCGCCCGGACCAGCACCTAGGCGGGCGGGAGCTGTGCGGCCCAGGGTTCGCGCGGGCCGGGTAGAGGCTCGAGCTGGGACCCCCGAGCGTGAACCCCGGAGCCGGCGGCGCTGGGGCCAGAGGGGCCGGGAGCCCCAGGGAGGCGGATCTGGGCCCCGAGAAGGACACCCGCCTGGATTTGCCCCGTAGGCCCGGCCCGGGCCCCTCGGGAGCAGAACAGCCTTG
Seq A exon
GCCGGAGCCCTCATGACTTCAGTGACCTGCTTCTGCCCCTCTAGGTCTATCAGCCACAGTCTCTGCATGTTTCCAAGAGCAGCAGAAAATGAACACATTGCAG
Seq C2 exon
GGGCCAGTGTCATTCAAAGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCGGCAACTGGACCCTGATGAGAAGATAACATACGGGGATGTGATGTTGGAGAACTACAGCCATCTAGTTTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000272391_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTAGAGGCTCGAGCTGG
R:
CTTCTCATCAGGGTCCAGTTGC
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains