BtaEX0030272 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7409733-7410239:-
Coord C1 exon
chr23:7410118-7410239
Coord A exon
chr23:7409927-7410022
Coord C2 exon
chr23:7409733-7409844
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCCCATTGCCCCCTCCCCAGCCA
3' ss Score
5.31
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
Exon sequences
Seq C1 exon
GAGTTTGCTGTCCTTTCTGAGCTGCGGCGGCTCCAGAACCAATGTCGTGGCTATGACCTCCGACCTGACCCCGATATCCAGCGGTGGCTACAGGGGCTCCGGCCACTGACAGAGGCGCAGAG
Seq A exon
CCATCGCGTGTCGTGTGAGGTGGAGACGCCTGGGAGCGGTGACCCACCTGCCCCGCGGGTGCTTCGGCCAACACTGGTCATCTCGCAGTGGACAGA
Seq C2 exon
GGTGCTGGGTTCTGTTGGGGGTCCCACCCCCCTCGTCTCCTGGGATCGGCCCAGTGTGGGAGCAGAGGAGGTGCCTGGAACCCCCGCCCCACTGCTGACCCGGCTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.758 C2=0.842
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGTCCTTTCTGAGCTGC
R:
CCGATCCCAGGAGACGAGG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development