RnoEX0075466 @ rn6
Exon Skipping
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5460377-5460906:-
Coord C1 exon
chr20:5460785-5460906
Coord A exon
chr20:5460578-5460673
Coord C2 exon
chr20:5460377-5460488
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTATGGCTGCCCTGTCCAGTCA
3' ss Score
3.85
5' ss Seq
GGAGTGAGG
5' ss Score
0.98
Exon sequences
Seq C1 exon
GAGTTTGCTGTCCTTTCTGAGCTGCTGCGCCTCCAGAACGAATGTCGTGGCTATGACCTCCGACCTAACCCTGATATCCAGCAATGGCTCCAGGGCCTCCAGCCATTAACTGAAGCTCAGAG
Seq A exon
TCACCGTGTATCCTGTGAAGTGGAGCCATCTGGTACCATTGATTCCCCCGCGGCAAGGACGCTTCGGCCAGCACTAGTCATCACACAGTGGACGGA
Seq C2 exon
AGTTCTGGGCTCCGTTGGAGGCCCCACTCCGCTTGTGTCCTGGGATCGGCCCACTGTGGGGGGAGATGAGGTGCCAGGAACCCCGGCCCCTCTGCTGACTCGCCTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474-'22-27,'22-26,23-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.576 C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATGTCGTGGCTATGACCT
R:
GGGTTCCTGGCACCTCATCTC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]