DreEX6050574 @ danRer10
Exon Skipping
Gene
ENSDARG00000042409 | RGL4
Description
ral guanine nucleotide dissociation stimulator-like 4 [Source:HGNC Symbol;Acc:HGNC:31911]
Coordinates
chr8:30942686-30944540:-
Coord C1 exon
chr8:30944419-30944540
Coord A exon
chr8:30944048-30944312
Coord C2 exon
chr8:30942686-30942757
Length
265 bp
Sequences
Splice sites
3' ss Seq
ATATTTTATTCTGTGTTTAGCTA
3' ss Score
6.79
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GAATTTGAAGTGATCGCTCAGATCAAGTTGCTGCAGCTGACCTGCAATTATTACAACTTCAGCAGAAACCAGCGCTTTATTGACTGGTTTAAGAGAGTGGAGAAACTCACAGAGACCGAGAG
Seq A exon
CTACTCTATGTCGTGTGATATCGAGCCGCCGTCTGAGTCGTTGTGCAAAAAGAATGGAGGCATCATGAAGCGCATGAGCGAGGAGTCGGGCTACAGCAGCGCTGCGTCACACTCCAAGTCCTTTGAGCAGCCGCGATTAAGCCAGTTCAAAGACTGCTTTAAAGATGGAGCTGATTCCCTCAGCCTCACCTCTGCAGGATCCAGTGGCTCAGATGCAGACGAGAGTCTCAGCCTGCTCAACTCTCCTGAATCAGGCAGTCAGAGA
Seq C2 exon
ACATCCACACCAACTGTGAAACACTCATCAACCTCAGAAACAGGAGAGCTCCCGTCTGATTCCTCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042409-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.382 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTTGAAGTGATCGCTCAGAT
R:
TTGAGGAATCAGACGGGAGCT
Band lengths:
189-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]