RnoEX0073766 @ rn6
Exon Skipping
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7125557-7126299:+
Coord C1 exon
chr3:7125557-7125678
Coord A exon
chr3:7125799-7125894
Coord C2 exon
chr3:7126098-7126299
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACAGCCACCTCTACCTTAGCTA
3' ss Score
2.53
5' ss Seq
CGAGTATGT
5' ss Score
6.61
Exon sequences
Seq C1 exon
GAGTTCGAAGTCATCGCCCAGATCAAGTTGCTCCAGTCGGCCTGCAACAACTACAGCATTGTTCCCGAGGAGCACTTTGGAGCCTGGTTCCGAGCCATGGGACGGCTCAGCGAGGCTGAGAG
Seq A exon
CTACAACCTGTCGTGTGAGCTGGAGCCCCCGTCTGAGTCAGCCAGCAACACCCTGAGGAGCAAGAAAAGCACAGCTATCGTCAAGCGCTGGAGCGA
Seq C2 exon
CCGCCAGGCTCCCAGCACGGAGCTCAGCACCAGTAGCAGTGCACACTCCAAGTCATGTGACCAGCTCCGGTGCAGCCCCTACCTCAGCAGCGGGGACATCACGGACGCACTCAGTGTGCACTCAGCTGGTTCATCCAGCTCTGACGTGGAGGAGATCAACATGAGCTTTGTTCCAGAGTCTCCTGATGGCCAGGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.331 C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGCCCAGATCAAGTTGC
R:
GGAGCTGGTCACATGACTTGG
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]