HsaEX6063719 @ hg38
Exon Skipping
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:HGNC:9842]
Coordinates
chr9:133101938-133102900:-
Coord C1 exon
chr9:133102779-133102900
Coord A exon
chr9:133102476-133102571
Coord C2 exon
chr9:133101938-133102139
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACTGCCCCTCTGCTCATAGCTA
3' ss Score
7.26
5' ss Seq
CGAGTAAGG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GAGTTCGAGGTGATCGCCCAGATCAAGCTGCTGCAGTCGGCCTGCAACAACTACAGCATCGCGCCAGATGAGCAATTTGGGGCCTGGTTCCGGGCCGTGGAGCGGCTCAGCGAGACTGAGAG
Seq A exon
CTACAACCTGTCGTGCGAGCTGGAGCCCCCATCCGAGTCAGCCAGCAACACCCTCAGGACCAAGAAGAACACAGCCATTGTCAAGCGCTGGAGCGA
Seq C2 exon
CCGCCAGGCCCCCAGCACTGAGCTCAGTACCAGTGGCAGCTCCCACTCCAAGTCCTGTGACCAGCTCAGGTGTGGCCCCTACCTCAGCAGCGGGGACATCGCTGACGCGCTCAGCGTGCACTCGGCCGGCTCCTCTAGCTCCGACGTGGAGGAGATCAACATCAGCTTCGTCCCGGAGTCTCCTGATGGCCAGGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATCAAGCTGCTGCAGTC
R:
CTGAGCTGGTCACAGGACTTG
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains