BtaEX6047048 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103130251-103131122:-
Coord C1 exon
chr11:103131001-103131122
Coord A exon
chr11:103130718-103130813
Coord C2 exon
chr11:103130251-103130452
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGCCCTGCTCTGTCCTGAAGCTA
3' ss Score
5.53
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GAATTCGAAGTGATCGCCCAGATCAAGCTGCTCCAGTCAGCCTGCAACAATTACAGCATCACGCCCGAAGAGCACTTCGGGGCCTGGTTCCGGGCCATGGAGAGGCTCAGCGAGGCTGAGAG
Seq A exon
CTACACATTGTCATGCGAGCTGGAGCCCCCCTCCGAGTCGGCCAGCAACACCCTCAAGGTGAAGAAGAACACGGCCATCGTCAAGCGCTGGAGCGA
Seq C2 exon
CCGCCAGGCCCCCAGCACAGAGCTCAGTACCAGCGGCAGCTGCCACTCCAAGTCCTGTGACCAACTCAGGTACGGCCCCTACCTCAGCAGCGGAGACATTGCTGACGCACTCAGCGTCCACTCGGCCGGCTCCTCTAGCTCCGACGTGGAGGAGATCAACATGAGCTTCGTCCCAGAGTCCCCCGACGGCCAGGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194-'12-20,'12-19,13-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.212 C2=0.397
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACAGCATCACGCCCGAAG
R:
AATGTCTCCGCTGCTGAGGTA
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]