GgaEX6015303 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6791247-6791850:-
Coord C1 exon
chr17:6791729-6791850
Coord A exon
chr17:6791554-6791649
Coord C2 exon
chr17:6791247-6791448
Length
96 bp
Sequences
Splice sites
3' ss Seq
AACCTTTGTCTCTCCCCCAGCTA
3' ss Score
8.4
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GAGTTTGAAGTCATTGCCCAGATCAAGCTGCTTCAGTCAGCCTGCAACAACTACAGCTTCACCCAGGAGGACCATTTTGTGGACTGGTTCCACAGTCTGGAGAGGCTCAGTGAGGCCGAGAG
Seq A exon
CTATGGGCTGTCATGCGAGATTGAGCCACTGTCTGAGTCAGCCAGCAACACGCTGAAGGCGAAGAAGAACACGGGAATCATCAAGCGGTGGAGCGA
Seq C2 exon
CCGGCAGCCAGCCAGCACCGAGCCCTGTGCCAGCGGCAGTTCCCACTCCAAGTCCTTCGACCAGCTCAAGTGCGGGCAGTACCTGTGCAGTGGGGATGCCACTGACTCAGTCAGCGTCACCTCCGCCGGCTCCAGCAGCTCCGACGTGGAGGAGATCAACATCAGCTTCATCCCTGAGTCCCCCGACTGCCAGGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGCTGCTTCAGTCAGCC
R:
CACTTGAGCTGGTCGAAGGAC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]