MmuEX6099974 @ mm9
Exon Skipping
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28403904-28404676:+
Coord C1 exon
chr2:28403904-28404025
Coord A exon
chr2:28404190-28404285
Coord C2 exon
chr2:28404475-28404676
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACAGCCATGTCTACCTTAGCTA
3' ss Score
3.73
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GAGTTCGAAGTCATTGCCCAGATCAAGTTGCTACAGTCAGCCTGCAACAACTACAGCATTGCTCCGGAAGAACACTTTGGAACATGGTTCCGAGCTATGGAGCGACTCAGTGAGGCTGAGAG
Seq A exon
CTACACCCTGTCGTGTGAGCTGGAGCCCCCGTCTGAGTCGGCCAGCAACACCCTGAGGAGCAAGAAAAGCACAGCCATTGTCAAGCGCTGGAGCGA
Seq C2 exon
CCGCCAGGCTCCCAGCACGGAGCTCAGCACCAGTAGCAGTGCCCACTCCAAGTCCTGTGACCAGCTTCGGTGCAGCCCTTACCTCGGCAGCGGGGACATCACCGACGCGCTCAGTGTGCACTCAGCTGGCTCTTCCAGCTCTGATGTGGAGGAGATCAACATGAGCTTCGTCCCAGAGTCTCCTGATGGCCAGGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGCTACAGTCAGCCTGC
R:
CGAAGCTGGTCACAGGACTTG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: