HsaEX6063719 @ hg19
Exon Skipping
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135973107-135978287:-
Coord C1 exon
chr9:135978166-135978287
Coord A exon
chr9:135977863-135977958
Coord C2 exon
chr9:135973107-135977526
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACTGCCCCTCTGCTCATAGCTA
3' ss Score
7.26
5' ss Seq
CGAGTAAGG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GAGTTCGAGGTGATCGCCCAGATCAAGCTGCTGCAGTCGGCCTGCAACAACTACAGCATCGCGCCAGATGAGCAATTTGGGGCCTGGTTCCGGGCCGTGGAGCGGCTCAGCGAGACTGAGAG
Seq A exon
CTACAACCTGTCGTGCGAGCTGGAGCCCCCATCCGAGTCAGCCAGCAACACCCTCAGGACCAAGAAGAACACAGCCATTGTCAAGCGCTGGAGCGA
Seq C2 exon
CCGCCAGGCCCCCAGCACTGAGCTCAGTACCAGTGGCAGCTCCCACTCCAAGTCCTGTGACCAGCTCAGGTGTGGCCCCTACCTCAGCAGCGGGGACATCGCTGACGCGCTCAGCGTGCACTCGGCCGGCTCCTCTAGCTCCGACGTGGAGGAGATCAACATCAGCTTCGTCCCGGAGTCTCCTGATGGCCAGGAAAAGAAGGTGACTGCCTGCCCTTCTCCCCAATATCCTTTCCCATCTCCCCACTCCAAATCCATGCATGGGGCCAGGAAGCCCTGGATCCTGAACACAGCTTCTAGAAGGTTCCCCATCTGGCAGCTGGCCTGGGGTGCCCCCACAGGGCAGTGGGATCTGCTGATCTTACCGTCTCCCTCAGTTCTGGGAATCAGCCTCACAGTCATCCCCGGAGACCTCCGGCATCAGCTCAGCCTCCAGCAGCACCTCGTCCTCCTCAGCCTCCACCACGCCCGTGGCTGCCACACGCACCCACAAGCGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-'19-26,'19-25,21-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.287
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0078818=RA=PD(31.8=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATCAAGCTGCTGCAGTC
R:
CTGAGCTGGTCACAGGACTTG
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)