MmuEX6076924 @ mm9
Exon Skipping
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:34072079-34072601:+
Coord C1 exon
chr17:34072079-34072200
Coord A exon
chr17:34072305-34072400
Coord C2 exon
chr17:34072490-34072601
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCATGGCTATCCTGTCCAGTCA
3' ss Score
4
5' ss Seq
GGAGTGAGG
5' ss Score
0.98
Exon sequences
Seq C1 exon
GAGTTTGCTATCCTTTCGGAGCTGTTGCGCCTCCAGAAAGAATGTCGTGGCTACGACCTCCGACCTAACTCTGATATCCAGCAATGGCTCCAGGGCCTCCAGCCTTTAACTGAAGCTCAGAG
Seq A exon
TCACCGTGTATCCTGTGAAGTGGAGCCACCAGGGACCAGTGACTCCCCCGCTGCAAGGACACCTCGGCCAACACTAGTGATCACACAGTGGACGGA
Seq C2 exon
AGTTCTGGGCTCTGTTGGAGGCCCCACTCCGCTTGTGTCCTGGGATCGGCCCAGTGTCGGGGGAGATGAGGTGCCTGGAACCCCAGCACCTCTGCTGACTCGCCTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.909 C2=0.868
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCCTCCAGAAAGAATGTC
R:
TTCCAGGCACCTCATCTCCC
Band lengths:
177-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: