BtaEX0030609 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000540 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12968]
Coordinates
chr19:34669813-34670537:-
Coord C1 exon
chr19:34670331-34670537
Coord A exon
chr19:34670091-34670219
Coord C2 exon
chr19:34669813-34669917
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTCTCTGTTCCTTAGGCG
3' ss Score
9.92
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGACCTGCGCTGTGCGGGCTGAGCCGCTGCTGCTGGTGCGGATCAACGCCTCGGGGGGCCTCATCCTGCGAATGGGCGCCATCAACCGCTGCCTGAAGCACCCGCTGGCCAGGGACACCCCGGTCTGCCTCCTCGCCGTCCTGGGGGGGCCACACTCAGGGAAGACCTTCCTCCTCAACCACCTGCTCCAGGGCCTGCCCGGCCTG
Seq A exon
GCGTCCGGCGAGGGCAGCTGGCCGAGGAGCGCGGGCTCCGGGCAGGGATTTAGGTGGGGAGCCAACGGCCTCTCTAGGGGCATCTGGATGTGGAGCCACCCTTTCCTGCTGGGGAAGGAGGGGAGGAAG
Seq C2 exon
GTGGCCGTGTTCCTGGTGGACACGGGGGACGTCATGAGCCCGGAGCTGAGCAGGGAAACAAGGACCCGGCTGTGCGCCCTCACCTCCATGCTGAGCTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000540_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PU(25.8=69.6)
A:
PF0226314=GBP=FE(22.6=100)
C2:
PF0226314=GBP=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATCCTGCGAATGGGC
R:
TAGGAGCTCAGCATGGAGGTG
Band lengths:
249-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development