HsaEX7009260 @ hg38
Exon Skipping
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:HGNC:12968]
Coordinates
chr17:19412938-19413681:+
Coord C1 exon
chr17:19412938-19413144
Coord A exon
chr17:19413280-19413411
Coord C2 exon
chr17:19413577-19413681
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTCTCTCCCCTGCAGGAG
3' ss Score
13.46
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGACGTGTCCTGTGAGGGCGGAGCCGCTGCTGCTGGTTCGCATCAATGCCTCTGGGGGCCTCATCCTTAGGATGGGGGCCATCAACCGCTGCCTGAAGCACCCTCTGGCCAGGGACACCCCAGTCTGCCTCCTCGCTGTCCTGGGGGAGCAGCACTCAGGGAAGTCCTTCCTCCTCAACCATTTGCTTCAGGGCTTGCCGGGCCTG
Seq A exon
GAGTCTGGTGAGGGCGGCCGGCCAAGAGGAGGAGAGGCATCCCTGCAGGGCTGCAGGTGGGGCGCCAATGGCCTCGCCAGGGGCATATGGATGTGGAGCCACCCCTTCTTGCTGGGGAAAGAAGGGAAGAAG
Seq C2 exon
GTGGCGGTGTTCCTGGTGGACACAGGGGATGCCATGAGCCCTGAGCTGAGCAGGGAAACAAGGATCAAGCTCTGTGCTCTCACCACGATGCTGAGCTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482-'10-9,'10-8,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.227 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=PU(19.0=69.6)
A:
PF0226314=GBP=FE(17.0=100)
C2:
PF0226314=GBP=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGGGCCTCATCCTTAG
R:
CATCGTGGTGAGAGCACAGAG
Band lengths:
247-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains